Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 2.4e-77 292.7 228 100.0
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.1e-71 273.9 224 82.1
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 4.3e-71 271.9 226 88.1
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 4.5e-68 261.9 225 88.0
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 3.0e-64 249.2 226 84.1
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 6.7e-64 248.1 231 68.8
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 5.7e-63 245.0 231 69.7
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 7.4e-63 244.6 229 72.1
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 7.4e-63 244.6 229 72.1
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 2.2e-62 243.0 228 73.7
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.8e-62 242.7 231 72.7
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 3.7e-62 242.3 231 58.0
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 8.2e-62 241.1 228 78.5
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.1e-61 240.7 226 71.7
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.1e-61 240.7 227 65.2
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.4e-61 240.4 224 74.6
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 4.1e-61 238.8 227 69.6
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 4.1e-61 238.8 228 69.3
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 7.0e-61 238.0 228 70.6
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 7.0e-61 238.0 228 70.6
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.2e-60 237.3 227 67.0
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.5e-60 236.9 228 73.2
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.5e-60 236.9 228 73.2
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.0e-60 236.5 228 78.1
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.7e-60 234.6 228 78.9
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.0e-59 234.2 231 66.2
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.0e-59 234.2 228 78.5
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.0e-59 234.2 228 73.7
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.3e-59 233.8 227 67.0
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.2e-59 233.0 228 71.1
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 2.2e-59 233.0 230 74.8
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 2.9e-59 232.6 228 71.1
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.9e-59 232.6 228 79.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.5e-59 231.5 228 69.3
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 2.5e-58 229.6 228 76.3
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 2.5e-58 229.6 226 72.6
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 2.5e-58 229.6 228 69.7
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 4.2e-58 228.8 227 64.8
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 4.2e-58 228.8 228 60.5
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 5.5e-58 228.4 231 75.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.5e-58 228.4 225 72.0
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 5.5e-58 228.4 227 76.7
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 5.5e-58 228.4 228 69.3
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.2e-58 228.0 226 75.7
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.2e-57 227.3 228 70.2
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 2.1e-57 226.5 229 69.4
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 6.1e-57 224.9 228 74.6
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.4e-56 223.8 228 69.3
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.4e-56 223.8 227 61.7
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 2.3e-56 223.0 228 73.7
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.3e-56 223.0 228 71.1
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 3.9e-56 222.2 228 70.2
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 5.2e-56 221.9 228 76.8
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 5.2e-56 221.9 224 73.2
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.1e-55 220.7 228 78.9
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.1e-55 220.7 230 69.6
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 1.1e-55 220.7 224 67.0
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.5e-55 220.3 227 70.5
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.5e-55 220.3 227 74.4
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.6e-55 219.5 227 59.9
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 4.4e-55 218.8 231 66.7
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 4.4e-55 218.8 226 64.6
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 9.7e-55 217.6 228 75.0
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 9.7e-55 217.6 228 76.8
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.3e-54 217.2 230 78.7
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 1.3e-54 217.2 228 76.8
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 1.3e-54 217.2 230 82.6
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 2.2e-54 216.5 226 60.6
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 2.8e-54 216.1 229 66.4
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 2.8e-54 216.1 230 81.7
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.4e-53 213.0 226 82.3
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 3.1e-53 212.6 222 72.5
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 3.1e-53 212.6 228 76.3
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 4.1e-53 212.2 245 66.1
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 4.1e-53 212.2 228 78.5
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 5.3e-53 211.8 226 82.3
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 9.1e-53 211.1 245 64.5
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.6e-52 210.3 228 71.5
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.0e-52 209.9 229 70.3
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 2.6e-52 209.5 229 72.1
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 3.5e-52 209.1 258 66.3
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.5e-52 208.8 232 73.7
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 5.9e-52 208.4 228 68.9
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 3.8e-51 205.7 228 65.4
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 8.5e-51 204.5 228 66.2
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 4.2e-50 202.2 229 63.8
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 4.2e-50 202.2 228 73.7
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 5.5e-50 201.8 226 61.5
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 2.7e-49 199.5 228 79.4
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.8e-48 194.9 150 66.0
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.2e-47 194.1 232 49.6
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 1.5e-47 193.7 229 65.9
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 3.7e-46 189.1 228 72.4
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.1e-45 187.6 233 55.4
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 3.1e-45 186.0 226 71.7
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 3.1e-45 186.0 226 72.1
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 3.1e-45 186.0 226 72.1
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 4.5e-44 182.2 230 51.3
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 5.9e-44 181.8 226 72.1
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 1.3e-43 180.6 226 71.7
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.2e-43 179.9 223 72.6
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 3.8e-43 179.1 331 51.7
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 3.8e-43 179.1 224 64.7
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.9e-42 176.8 229 57.2
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 2.5e-42 176.4 226 49.1
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 3.2e-42 176.0 228 58.8
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.1e-41 173.3 228 54.4
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 4.7e-41 172.2 223 43.5
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.0e-40 171.0 226 54.0
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.0e-40 169.1 228 56.1
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 5.2e-40 168.7 235 58.7
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 6.8e-40 168.3 228 56.1
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.7e-38 162.5 230 55.2
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 9.1e-37 157.9 223 52.5
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 4.5e-36 155.6 188 70.2
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.3e-35 154.1 92 77.2
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 2.8e-33 146.4 211 62.1
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.3e-26 122.9 64 84.4
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.0e-24 117.9 223 47.1
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 3.4e-23 112.8 90 61.1
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 9.8e-23 111.3 71 71.8
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.3e-22 110.9 223 37.2
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.4e-21 107.5 68 72.1
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.1e-21 105.9 223 35.9
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.4e-16 90.9 158 35.4
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 1.8e-16 90.5 223 31.4
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.4e-13 80.9 82 48.8
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.3e-10 69.7 89 43.8
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.4e-08 64.3 40 72.5
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 4.4e-07 59.3 78 44.9


User provided reference genes

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