Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 4.1e-259 897.5 445 100.0
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 4.6e-242 840.9 443 93.0
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 3.9e-233 811.2 443 89.6
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 5.1e-233 810.8 443 89.8
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.5e-229 799.3 443 87.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.3e-225 786.2 443 86.2
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 6.9e-214 747.3 441 81.6
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 7.6e-213 743.8 443 79.0
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 6.4e-212 740.7 445 84.0
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.2e-210 736.5 443 79.5
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.5e-210 734.9 442 79.6
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 8.7e-209 730.3 443 79.7
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 2.1e-207 725.7 443 79.0
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 3.7e-207 724.9 443 77.9
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 2.4e-206 722.2 474 74.5
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 3.1e-206 721.8 446 82.1
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 2.0e-205 719.2 443 77.4
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 5.8e-205 717.6 440 76.8
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.3e-204 716.5 441 78.2
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 1.7e-204 716.1 442 77.6
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 1.7e-204 716.1 452 76.8
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 4.9e-204 714.5 442 77.4
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.9e-204 714.5 443 76.3
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.4e-203 713.0 442 76.7
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.2e-203 711.8 441 76.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.2e-203 711.8 444 76.1
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 9.3e-203 710.3 441 76.9
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 9.3e-203 710.3 441 77.3
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 2.7e-202 708.8 443 77.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 6.0e-202 707.6 442 78.1
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.3e-201 706.4 442 77.8
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.3e-201 706.4 443 76.5
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.8e-201 706.1 443 75.8
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.9e-200 702.6 443 76.1
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.9e-200 702.6 361 92.0
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 5.7e-200 701.0 437 76.7
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 5.7e-200 701.0 443 75.4
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 7.4e-200 700.7 445 76.0
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 2.8e-199 698.7 444 75.2
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 8.2e-199 697.2 443 77.4
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.4e-198 695.7 439 77.0
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.1e-198 694.9 440 75.9
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 5.3e-198 694.5 447 75.4
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 3.8e-196 688.3 441 73.9
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.1e-195 686.8 444 74.3
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.9e-195 686.0 445 73.0
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.9e-195 686.0 443 76.1
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 5.5e-195 684.5 448 75.9
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.1e-194 682.6 441 75.7
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.7e-194 682.2 445 79.1
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 6.1e-194 681.0 443 74.9
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.0e-193 680.2 443 72.5
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.7e-192 674.5 443 72.2
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.7e-191 672.9 438 72.1
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.8e-191 671.4 442 74.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.4e-190 669.8 445 71.9
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.4e-190 669.1 468 71.4
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 3.1e-190 668.7 462 69.9
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 5.3e-190 667.9 433 72.7
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.1e-187 660.2 443 70.4
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 3.2e-187 658.7 442 71.0
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.1e-186 656.0 405 75.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.7e-186 655.6 442 72.9
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.0e-185 653.7 451 70.3
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.0e-185 653.7 443 71.3
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 3.9e-185 651.7 442 71.3
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 8.2e-183 644.0 419 75.4
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 1.4e-182 643.3 441 70.3
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 3.1e-182 642.1 442 69.0
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.5e-181 638.6 448 70.1
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 5.3e-174 614.8 416 72.1
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.0e-172 610.5 465 67.1
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.7e-172 609.8 422 71.6
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.7e-167 593.2 435 66.0
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.1e-166 589.0 411 69.3
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.5e-165 585.1 387 72.6
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 7.7e-165 584.3 345 78.3
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-164 583.9 387 72.6
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.7e-164 583.2 447 66.2
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 2.9e-164 582.4 442 65.6
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 6.1e-162 574.7 654 49.5
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 7.5e-160 567.8 382 69.6
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.6e-157 560.1 350 77.1
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.0e-153 545.8 437 59.3
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 4.5e-149 531.9 444 59.7
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.1e-146 523.1 443 61.4
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 3.1e-145 519.2 352 70.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 7.0e-142 508.1 285 88.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 7.8e-141 504.6 285 88.4
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 4.3e-139 498.8 387 63.6
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 2.6e-136 489.6 499 54.7
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 2.9e-135 486.1 285 82.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.1e-134 484.2 442 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 3.2e-134 482.6 444 56.5
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 5.4e-134 481.9 340 70.9
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.7e-133 479.6 434 57.8
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 7.8e-133 478.0 441 56.0
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.3e-132 477.2 430 57.7
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 3.3e-131 472.6 282 82.3
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 6.2e-130 468.4 381 64.8
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.5e-125 452.6 363 57.9
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 5.1e-124 448.7 282 77.3
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.5e-123 447.2 442 55.0
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.4e-120 435.6 447 54.4
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.2e-112 411.0 286 69.9
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.2e-109 401.0 441 50.3
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 5.1e-108 395.6 449 44.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.8e-105 387.1 287 65.9
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.1e-102 377.9 443 49.9
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 7.1e-102 375.2 407 50.4
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.8e-100 370.5 442 47.1
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 6.2e-98 362.1 213 79.8
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.1e-97 359.8 213 78.9
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 8.7e-92 341.7 419 48.0
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 9.3e-86 321.6 339 46.6
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.1e-68 262.7 163 76.1
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.1e-68 262.7 163 76.1
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.1e-68 262.7 152 80.3
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.7e-67 258.5 163 74.8
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 9.4e-62 241.9 127 90.6
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 3.3e-59 233.4 187 62.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.4e-59 233.0 152 71.1
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 8.5e-55 218.8 128 78.9
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.1e-49 201.8 124 73.4
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.4e-46 188.7 127 67.7
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.3e-44 184.1 254 39.0
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 4.0e-44 183.3 123 66.7
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 2.0e-43 181.0 129 69.8
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-42 177.9 95 88.4
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 3.3e-38 163.7 176 51.7
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 2.0e-35 154.5 104 72.1
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.0e-31 139.8 112 60.7
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.1e-29 134.4 95 62.1
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 7.5e-27 125.9 82 67.1
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 2.3e-23 114.4 107 56.1
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.9e-18 96.7 69 72.5
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.5e-16 90.5 66 75.8
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 6.0e-16 89.7 69 72.5
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 7.8e-16 89.4 64 62.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-14 84.7 45 86.7
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.8e-13 80.9 48 70.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.9e-11 72.4 31 93.5


User provided reference genes

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