Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 0.0e+00 1248.0 635 100.0
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 8.7e-312 1073.2 631 86.8
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 2.1e-304 1048.5 639 85.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.8e-295 1018.8 638 83.1
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 5.1e-279 964.1 635 77.6
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 3.9e-263 911.4 626 75.1
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.0e-262 909.1 626 74.3
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 5.3e-260 901.0 626 73.8
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.4e-255 886.3 618 71.5
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.8e-255 885.9 631 72.9
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.3e-255 885.6 635 73.1
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.0e-250 870.2 623 71.9
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.8e-223 777.7 561 70.2
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.1e-215 753.8 634 61.2
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.0e-214 749.6 635 61.7
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 7.0e-212 741.1 634 60.4
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 6.6e-210 734.6 637 61.9
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.5e-209 732.6 638 60.8
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 2.4e-204 716.1 640 59.8
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.5e-201 706.8 648 60.8
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.5e-201 706.1 639 59.6
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.3e-201 705.7 640 58.6
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 9.5e-201 704.1 639 59.6
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.2e-200 703.7 640 60.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.6e-200 703.4 642 59.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.6e-200 702.2 640 57.7
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.1e-200 701.0 634 57.6
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.8e-199 699.9 636 57.4
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.4e-199 699.5 639 58.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.0e-198 696.4 629 59.3
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 7.1e-196 688.0 618 58.3
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-195 686.4 634 57.4
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 6.0e-195 684.9 644 57.8
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.0e-194 684.1 651 57.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.9e-194 682.2 557 63.9
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 5.1e-194 681.8 634 56.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.1e-194 681.8 635 57.2
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 5.6e-193 678.3 636 58.6
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 9.0e-191 671.0 645 56.0
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.4e-190 669.1 633 56.7
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.3e-189 667.2 620 56.9
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.2e-189 666.4 677 53.6
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 2.7e-187 659.4 640 57.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.6e-187 658.7 634 55.7
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-186 657.1 685 52.7
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 3.0e-186 656.0 624 55.8
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.5e-185 652.9 643 54.3
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.3e-184 650.6 626 56.7
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.1e-184 649.8 640 54.7
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.8e-184 649.4 634 55.8
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.2e-182 644.0 641 54.4
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 2.6e-182 642.9 642 54.7
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.8e-182 641.7 596 57.6
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.4e-180 637.1 649 53.6
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 3.0e-178 629.4 645 54.0
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 3.0e-178 629.4 620 53.9
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 3.9e-178 629.0 625 54.2
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 5.1e-178 628.6 659 53.9
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.9e-177 626.7 642 52.6
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.9e-177 626.7 646 52.9
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.3e-177 625.9 647 53.0
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.6e-177 625.2 614 54.6
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.6e-176 623.6 645 53.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.1e-175 620.9 642 53.7
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-175 620.9 580 58.4
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.4e-175 620.5 621 53.5
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.4e-175 620.5 645 53.2
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.4e-175 619.8 494 65.4
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 7.6e-174 614.8 644 51.9
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.9e-174 614.4 629 52.3
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.2e-172 609.4 662 52.3
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.9e-170 602.4 646 51.7
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.7e-170 601.7 619 51.2
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 8.7e-170 601.3 591 55.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 7.4e-169 598.2 632 50.6
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.8e-168 596.3 602 54.5
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.4e-167 594.0 589 55.7
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.4e-167 593.2 646 51.4
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 4.0e-167 592.4 540 57.6
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.3e-167 592.0 645 50.7
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.2e-166 590.9 640 50.8
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.4e-166 589.3 631 50.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.5e-166 589.0 655 50.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.8e-166 588.6 640 51.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 5.8e-166 588.6 642 52.6
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.7e-165 587.0 648 51.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.7e-165 587.0 632 50.8
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.8e-165 585.9 516 59.9
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.8e-165 585.9 633 50.1
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.1e-164 584.3 634 49.8
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.4e-164 583.9 656 52.7
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 4.2e-164 582.4 661 51.0
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 7.1e-164 581.6 633 49.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.2e-163 580.9 625 53.4
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-163 580.1 707 48.1
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.0e-162 577.8 630 49.4
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.0e-162 577.8 630 49.4
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-162 577.0 628 51.8
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.3e-162 576.6 683 48.2
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 6.7e-162 575.1 641 51.8
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.3e-161 572.4 602 53.7
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 7.4e-161 571.6 632 50.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 9.7e-161 571.2 629 49.1
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 9.7e-161 571.2 629 49.1
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.8e-160 569.7 629 49.0
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 6.3e-160 568.5 646 50.6
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 8.2e-160 568.2 518 57.1
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 2.4e-159 566.6 566 54.1
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 9.0e-159 564.7 656 47.6
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.5e-158 562.4 618 48.9
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 5.9e-158 562.0 644 49.7
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 7.2e-156 555.1 491 58.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.1e-155 553.5 598 49.0
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 7.9e-155 551.6 496 58.3
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 3.1e-151 539.7 529 53.5
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.6e-150 536.6 567 52.2
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.8e-149 532.7 691 46.5
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 4.2e-148 529.3 492 56.3
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.8e-146 523.9 582 49.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.1e-143 514.6 633 47.2
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 4.1e-143 512.7 523 51.6
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.9e-141 506.5 618 47.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 5.5e-140 502.3 529 52.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.8e-136 490.0 529 51.6
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.4e-124 448.4 421 56.1
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.0e-122 443.0 486 50.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.4e-119 434.5 634 43.2
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.3e-117 427.9 474 50.0
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.3e-117 427.9 493 48.7
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.3e-117 427.9 493 48.7
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 6.1e-115 419.1 552 45.5
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 2.3e-114 417.2 621 41.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 3.7e-112 409.8 608 41.3
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.1e-111 408.3 621 42.8
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.4e-111 407.9 643 40.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 7.5e-105 385.6 381 54.9
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 5.6e-100 369.4 511 45.6
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.7e-88 331.3 352 54.0
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.8e-75 287.3 681 33.0
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 3.4e-73 280.4 508 36.8
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.4e-58 231.1 275 48.4
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.2e-49 202.2 167 55.7
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.3e-43 182.2 195 46.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.3e-43 182.2 138 64.5
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.3e-26 123.6 158 38.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 5.5e-23 113.6 62 82.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.7e-19 102.1 154 42.9
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-08 63.9 41 65.9
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 5.0e-08 63.9 124 34.7
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.5e-07 62.4 60 48.3


User provided reference genes

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