Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 8.9e-217 756.9 455 100.0
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.1e-145 520.8 448 72.5
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 3.1e-145 519.2 468 74.1
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 9.7e-139 497.7 435 72.4
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 5.3e-137 491.9 440 68.9
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 1.2e-136 490.7 456 67.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.5e-134 483.0 437 74.6
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 4.2e-134 482.3 435 70.8
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.7e-130 470.3 445 71.0
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 2.4e-121 439.9 444 68.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-119 434.5 440 68.2
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-116 424.5 438 68.3
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.3e-106 391.0 460 56.7
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 8.3e-106 388.3 440 58.4
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.3e-103 380.9 491 51.1
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.1e-101 373.6 452 54.4
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 2.1e-101 373.6 449 55.5
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.1e-101 373.6 443 53.3
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.0e-100 369.4 452 54.0
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.4e-99 366.3 485 53.2
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 9.8e-99 364.8 439 57.6
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 4.9e-98 362.5 465 55.9
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.9e-97 360.5 451 54.3
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 9.2e-97 358.2 480 50.8
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.2e-96 357.8 444 56.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 6.0e-96 355.5 433 57.5
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 3.0e-95 353.2 448 54.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 4.3e-94 349.4 458 52.0
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 9.5e-94 348.2 451 53.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 8.9e-92 341.7 441 53.5
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.6e-91 340.1 524 53.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 4.4e-91 339.3 461 50.5
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.4e-91 339.3 548 46.4
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 7.5e-91 338.6 457 51.2
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 9.9e-91 338.2 447 57.5
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 4.1e-89 332.8 444 50.0
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.4e-89 332.4 445 53.7
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 7.1e-89 332.0 411 54.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 9.2e-89 331.6 450 53.8
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 9.2e-89 331.6 445 53.3
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.0e-87 328.2 465 52.3
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.3e-87 327.8 428 57.9
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.0e-87 326.6 463 52.5
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 8.6e-87 325.1 416 54.6
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 5.6e-86 322.4 445 49.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.1e-85 320.5 424 57.8
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 2.0e-83 313.9 431 49.4
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 2.0e-83 313.9 457 47.0
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 2.6e-83 313.5 414 53.6
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.8e-83 312.4 463 51.2
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 2.2e-82 310.5 429 49.0
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 3.8e-82 309.7 434 49.5
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.4e-81 307.0 381 55.1
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.3e-79 301.2 436 47.2
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 3.9e-79 299.7 445 49.9
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.1e-78 298.1 431 46.9
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 9.6e-78 295.0 443 48.3
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 3.6e-77 293.1 433 52.4
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.4e-76 291.2 418 51.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.0e-75 287.3 451 45.9
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.4e-75 286.2 467 49.5
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.7e-74 284.3 433 45.7
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 6.4e-74 282.3 419 49.6
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.2e-72 278.1 395 49.9
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.1e-72 277.3 406 51.2
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 2.7e-72 276.9 428 48.8
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.8e-72 275.4 443 48.5
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.3e-71 274.6 349 54.4
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 3.0e-71 273.5 431 45.5
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 3.0e-71 273.5 577 41.2
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 3.9e-71 273.1 410 49.5
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 3.9e-71 273.1 393 47.6
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 5.1e-71 272.7 437 45.3
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 8.7e-71 271.9 441 47.8
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 3.3e-70 270.0 422 46.9
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.3e-70 270.0 432 46.1
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 9.6e-70 268.5 421 46.8
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.6e-69 267.7 430 44.2
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.4e-68 264.6 453 46.4
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.8e-68 264.2 441 46.7
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 3.1e-68 263.5 437 44.2
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 9.0e-68 261.9 414 43.7
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 5.8e-67 259.2 414 48.8
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 7.6e-67 258.8 436 44.3
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 7.6e-67 258.8 443 43.8
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 6.4e-66 255.8 443 43.8
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 4.2e-65 253.1 425 44.5
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.3e-65 251.9 422 47.4
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.7e-64 250.4 418 43.5
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 7.9e-64 248.8 420 40.5
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.0e-63 248.4 429 42.9
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.1e-62 245.0 440 41.8
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.5e-62 244.6 423 42.8
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.5e-62 243.8 444 41.4
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 5.6e-62 242.7 426 46.5
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 7.4e-62 242.3 272 60.3
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.3e-61 241.5 422 46.2
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 3.7e-61 240.0 430 42.1
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.4e-60 238.0 439 41.2
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.0e-60 236.5 421 42.3
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.0e-59 234.2 419 39.4
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.9e-58 230.3 333 46.8
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.9e-58 230.3 420 42.9
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 2.9e-58 230.3 338 56.8
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 8.4e-58 228.8 427 44.3
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 5.5e-57 226.1 402 44.0
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.7e-56 223.8 368 46.2
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.3e-55 221.5 482 35.9
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.8e-53 213.8 398 39.4
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 9.0e-52 208.8 283 52.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.9e-50 203.8 401 41.6
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.1e-36 156.8 356 38.8
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 6.5e-34 149.4 177 53.7
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.9e-33 147.9 256 42.6
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.5e-33 147.5 125 64.0
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.3e-31 141.0 431 29.0
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.6e-30 137.5 261 39.5
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 2.8e-29 134.0 461 35.4
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 3.7e-29 133.7 483 27.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.4e-28 131.0 99 69.7
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.2e-26 124.4 120 57.5
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 3.8e-26 123.6 469 32.6
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.2e-25 119.4 417 29.7
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.1e-20 105.5 105 52.4
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.0e-18 99.0 104 54.8
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.7e-18 98.2 274 34.7
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.2e-18 97.8 172 41.3
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 5.5e-17 93.2 63 68.3
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 5.5e-17 93.2 67 67.2
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.6e-16 91.7 249 34.5
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.7e-16 90.1 59 78.0
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.7e-11 74.3 58 58.6
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 4.5e-11 73.6 144 39.6
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.0e-10 72.4 70 51.4
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.1e-08 64.7 57 52.6
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 7.5e-06 56.2 369 29.8


User provided reference genes

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