Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 0.0e+00 1395.6 674 100.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 0.0e+00 1201.8 669 84.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 0.0e+00 1195.6 661 87.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 0.0e+00 1190.3 672 85.3
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 0.0e+00 1109.0 671 79.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1101.3 674 78.9
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1098.6 673 79.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 0.0e+00 1093.6 672 78.6
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 0.0e+00 1080.5 686 76.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.9e-308 1062.0 671 75.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.3e-285 986.1 675 69.9
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 7.3e-284 980.3 682 69.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.1e-278 962.2 672 68.9
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.3e-272 943.0 671 67.8
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.3e-268 928.3 692 66.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.8e-266 922.5 695 64.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.4e-263 912.9 664 65.8
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 7.1e-263 910.6 680 64.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-261 906.7 725 64.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 6.9e-258 894.0 685 63.4
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.8e-257 891.0 679 63.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.6e-257 890.6 733 62.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-256 889.4 685 64.1
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-255 886.3 681 64.8
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.6e-254 882.9 681 64.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.5e-254 881.7 685 63.9
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 7.4e-252 874.0 665 63.8
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.7e-252 873.6 681 63.1
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.6e-251 872.8 677 61.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.6e-251 872.8 713 61.4
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 2.2e-248 862.4 729 59.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 6.5e-248 860.9 682 61.6
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.4e-247 859.8 686 61.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 4.2e-247 858.2 667 62.2
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 7.2e-247 857.4 676 63.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.3e-247 857.1 680 61.6
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.1e-246 855.9 678 60.3
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.9e-246 854.0 676 60.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 3.9e-245 851.7 677 60.9
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 6.7e-245 850.9 683 59.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.7e-245 850.9 676 61.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.8e-245 850.5 698 60.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.3e-244 848.2 684 60.4
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 7.4e-244 847.4 690 60.9
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.7e-243 845.1 690 60.6
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.3e-243 844.3 698 59.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.4e-242 842.4 725 58.3
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.1e-242 842.0 678 60.5
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.1e-242 841.6 676 63.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.2e-241 840.1 686 60.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.2e-241 840.1 679 61.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.4e-241 838.6 663 62.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.4e-239 833.2 702 59.4
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.9e-239 832.8 675 60.6
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.2e-239 832.0 680 61.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.4e-239 830.5 707 58.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-237 826.6 675 59.6
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 7.4e-236 820.8 680 60.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.2e-235 819.3 680 60.4
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 4.8e-235 818.1 688 59.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.8e-235 818.1 718 58.4
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.8e-235 818.1 694 57.6
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.3e-235 817.8 688 58.0
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.2e-235 817.4 674 58.8
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-234 816.2 691 58.0
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 4.1e-234 815.1 677 58.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.3e-234 814.7 694 57.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-233 813.5 661 62.3
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.2e-232 809.3 691 57.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.9e-231 806.2 675 59.1
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.5e-231 804.7 685 58.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-229 799.3 662 61.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.0e-229 798.9 613 63.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.5e-228 796.6 681 58.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.6e-228 795.8 679 57.3
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.4e-228 794.3 688 57.8
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 9.7e-228 793.9 679 58.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 9.7e-228 793.9 690 57.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.4e-226 790.0 682 57.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 5.9e-225 784.6 845 50.2
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.9e-224 782.3 591 64.1
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.1e-222 774.6 673 56.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.7e-220 768.1 624 60.3
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.7e-219 766.5 666 56.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.2e-219 766.1 676 55.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.2e-219 764.2 666 56.3
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.1e-218 761.9 665 55.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.0e-216 755.0 670 55.4
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.5e-215 753.4 666 55.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.2e-215 752.3 702 54.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.2e-215 752.3 683 56.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.2e-215 751.9 665 54.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 5.5e-215 751.5 676 54.6
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.2e-215 751.1 681 54.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.4e-215 750.7 614 60.7
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.4e-215 750.7 685 53.9
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.0e-212 743.0 676 53.7
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.4e-212 741.9 679 53.0
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 5.7e-212 741.5 676 53.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 5.7e-212 741.5 676 53.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 5.7e-212 741.5 676 54.6
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 7.5e-212 741.1 676 53.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 8.3e-211 737.6 673 54.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-210 735.7 668 53.4
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.0e-210 734.6 696 54.7
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.6e-209 733.4 683 53.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.5e-209 731.9 675 54.2
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.9e-208 729.2 684 52.8
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.6e-208 727.6 684 51.8
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.2e-204 717.2 675 55.4
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.6e-204 716.1 685 51.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.5e-204 714.5 678 51.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.2e-203 713.0 675 51.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 7.0e-202 708.0 679 54.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.2e-201 707.2 701 51.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-201 706.8 681 53.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.5e-201 705.7 593 59.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.9e-200 702.6 675 50.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.6e-200 701.0 667 55.5
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.7e-198 695.3 642 53.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.4e-196 689.1 675 53.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.9e-195 686.0 740 47.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.6e-190 670.2 536 62.1
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-189 666.0 567 57.0
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.8e-189 664.8 694 49.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.4e-173 614.0 558 56.3
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.0e-173 612.5 673 48.3
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.6e-172 609.8 685 46.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.4e-172 609.4 528 56.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.5e-169 599.4 668 47.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.9e-168 595.9 674 47.5
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 6.9e-149 531.9 543 49.2
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.3e-136 491.1 388 62.1
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 7.4e-135 485.3 323 68.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 9.4e-130 468.4 425 52.5
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 6.3e-118 429.1 387 54.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.3e-112 410.6 287 65.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.1e-101 375.2 462 42.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-100 371.7 214 79.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.5e-95 354.8 454 42.5
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 4.5e-92 343.2 553 35.3
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.9e-92 342.8 396 44.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.2e-87 328.6 311 48.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.9e-78 297.4 582 32.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 6.6e-75 286.2 541 33.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 7.8e-68 262.7 328 44.5
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.5e-66 258.5 161 73.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.3e-58 229.6 167 66.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.4e-55 220.7 148 67.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-51 208.8 212 50.9
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 2.1e-49 201.4 241 46.1
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-48 197.6 226 46.9
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.5e-44 184.1 134 64.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.9e-42 178.3 119 65.5
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.3e-41 175.6 136 62.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.9e-37 161.8 180 50.0
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.9e-37 161.8 210 44.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.6e-36 157.1 379 29.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-35 155.6 99 72.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-35 155.6 99 72.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-35 155.6 99 72.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-35 154.8 147 55.1
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.0e-27 129.4 247 32.4
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.6e-25 122.1 272 33.8
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 4.2e-21 107.5 228 32.9
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.7e-20 104.8 247 28.3
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.6e-20 104.0 201 34.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.3e-19 102.4 73 65.8
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 4.3e-18 97.4 59 71.2
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.1e-16 90.9 119 37.0
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 3.2e-13 81.3 54 70.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-12 77.8 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-12 77.8 48 66.7


User provided reference genes

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