Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 7.8e-122 440.7 252 100.0
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 7.1e-91 337.8 251 75.7
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 3.3e-80 302.4 252 69.8
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.5e-77 293.5 251 64.9
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.1e-75 287.3 257 68.5
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 4.2e-75 285.4 253 63.2
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 6.9e-70 268.1 254 60.6
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 1.5e-69 266.9 253 60.1
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 6.1e-66 255.0 252 60.7
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 6.7e-65 251.5 252 58.3
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 4.7e-58 228.8 255 56.1
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 4.4e-56 222.2 255 54.9
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 5.2e-49 198.7 259 51.4
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 1.5e-48 197.2 254 50.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.8e-47 193.0 240 50.4
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 3.1e-46 189.5 256 51.6
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 9.1e-46 188.0 255 48.2
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 1.2e-45 187.6 235 50.6
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.6e-45 187.2 259 48.6
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 3.5e-45 186.0 254 48.4
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.0e-44 184.5 260 50.0
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 1.0e-44 184.5 259 48.3
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 3.2e-43 179.5 259 47.9
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 7.2e-43 178.3 258 46.5
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 1.6e-42 177.2 263 44.9
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 4.7e-42 175.6 245 46.9
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.0e-41 174.5 258 46.5
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 4.4e-40 169.1 257 43.6
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 2.8e-39 166.4 259 43.2
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.8e-39 166.4 259 43.2
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.8e-39 166.4 259 42.9
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 3.7e-39 166.0 258 43.0
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.4e-38 164.1 256 46.9
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 2.4e-38 163.3 261 45.6
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.4e-38 163.3 253 41.9
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 2.4e-38 163.3 255 46.3
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 4.1e-38 162.5 267 44.9
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.2e-37 161.0 255 46.3
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.5e-37 159.1 245 43.7
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 5.9e-37 158.7 258 42.6
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.3e-36 157.5 259 43.6
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.7e-36 157.1 251 45.0
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 2.3e-36 156.8 258 41.9
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.8e-36 156.0 253 42.7
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 3.8e-36 156.0 251 44.6
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 6.6e-36 155.2 263 41.1
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.9e-35 153.7 255 43.5
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 3.3e-35 152.9 251 43.0
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.8e-34 149.8 261 42.9
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 3.6e-34 149.4 254 43.3
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 8.0e-34 148.3 254 44.9
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 1.0e-33 147.9 253 39.9
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 2.3e-33 146.7 259 42.1
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 8.9e-33 144.8 257 42.4
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 4.4e-32 142.5 244 41.4
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 9.8e-32 141.4 219 43.4
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.3e-31 141.0 216 45.8
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 6.3e-31 138.7 215 46.5
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 6.3e-31 138.7 252 40.9
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 1.1e-30 137.9 254 41.7
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 2.4e-30 136.7 199 47.7
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 7.0e-30 135.2 229 43.2
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 1.6e-29 134.0 255 42.4
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 2.0e-29 133.7 239 41.4
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 7.8e-29 131.7 107 65.4
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 7.8e-29 131.7 107 65.4
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 1.0e-28 131.3 253 39.5
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 1.0e-28 131.3 205 45.4
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 1.7e-28 130.6 144 50.0
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.9e-28 129.4 252 38.5
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 6.6e-28 128.6 228 39.9
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 1.1e-27 127.9 214 42.5
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.5e-27 126.7 251 39.0
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 4.3e-27 125.9 206 42.7
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.2e-26 124.4 158 49.4
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 4.7e-26 122.5 167 46.7
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 8.0e-26 121.7 253 36.4
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 6.8e-25 118.6 251 35.9
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 1.2e-24 117.9 139 48.9
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 1.2e-24 117.9 131 50.4
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 2.0e-24 117.1 116 54.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 2.0e-24 117.1 116 54.3
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 2.0e-24 117.1 116 54.3
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 2.0e-24 117.1 116 54.3
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 2.0e-24 117.1 148 47.3
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 2.6e-24 116.7 148 45.9
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 3.4e-24 116.3 241 36.5
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 3.4e-24 116.3 253 38.7
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 5.8e-24 115.5 132 49.2
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 7.5e-24 115.2 149 45.6
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 7.5e-24 115.2 253 36.4
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 3.7e-23 112.8 172 43.0
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 3.7e-23 112.8 138 49.3
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 3.7e-23 112.8 138 49.3
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 4.9e-23 112.5 138 49.3
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 4.9e-23 112.5 142 45.8
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.4e-22 110.2 251 36.7
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 7.8e-21 105.1 147 44.9
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 1.5e-19 100.9 132 50.8
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 1.5e-19 100.9 182 40.7
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 1.9e-19 100.5 63 71.4
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 9.5e-19 98.2 137 45.3
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 1.2e-18 97.8 224 37.1
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 2.2e-15 87.0 170 42.4
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.7e-12 77.4 206 34.0
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.0e-12 76.6 165 35.8
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 8.9e-09 65.1 195 30.3
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 2.2e-07 60.5 109 37.6


User provided reference genes

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