Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.0e-292 1008.4 531 100.0
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 3.2e-274 948.0 531 93.2
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 6.0e-273 943.7 531 92.7
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.4e-269 932.6 526 92.6
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 9.3e-266 919.8 536 88.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.6e-262 909.1 531 89.1
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 4.8e-262 907.5 540 87.6
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 6.2e-262 907.1 532 89.3
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.6e-257 892.5 549 84.7
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 3.9e-256 887.9 553 84.1
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 8.7e-248 860.1 503 87.1
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.3e-246 856.3 531 82.9
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.7e-246 854.7 531 83.2
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 4.8e-246 854.4 539 82.4
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.1e-245 853.2 531 82.5
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.8e-245 852.4 531 82.1
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 4.5e-244 847.8 531 84.7
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.2e-243 845.5 531 82.1
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 2.2e-243 845.5 531 81.5
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 6.5e-243 844.0 531 81.5
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.9e-242 842.4 531 81.9
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 2.5e-242 842.0 533 80.9
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 5.5e-242 840.9 533 81.2
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 2.1e-241 839.0 529 81.9
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 4.6e-241 837.8 512 84.6
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 4.6e-241 837.8 506 84.2
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 3.0e-240 835.1 527 81.0
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 8.7e-240 833.6 531 81.0
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.1e-239 833.2 542 80.6
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 4.3e-239 831.2 527 80.6
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-239 830.9 532 80.8
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.4e-237 825.5 506 83.0
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.8e-236 820.8 504 82.7
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 7.6e-236 820.5 536 79.5
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.3e-235 819.7 518 80.1
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.3e-235 819.7 535 79.3
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.1e-234 816.6 539 78.3
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 7.9e-233 810.4 501 81.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 3.3e-231 805.1 534 77.9
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 3.3e-231 805.1 502 81.5
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 9.0e-229 797.0 537 77.5
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 9.0e-229 797.0 542 76.4
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.3e-227 793.1 521 78.7
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.2e-227 792.3 504 79.0
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 6.5e-227 790.8 504 78.8
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.9e-226 789.3 501 78.6
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 3.2e-226 788.5 504 78.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 9.4e-226 786.9 541 76.0
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 4.6e-225 784.6 522 77.4
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 4.6e-225 784.6 509 78.8
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 6.1e-225 784.3 500 79.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.8e-224 782.7 521 76.0
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.9e-224 781.6 531 77.2
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.1e-224 781.2 536 75.7
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.8e-222 775.4 503 79.7
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 2.4e-221 772.3 511 78.5
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 5.3e-221 771.2 531 75.0
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 1.5e-220 769.6 523 76.1
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 3.4e-220 768.5 513 78.9
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 4.5e-220 768.1 534 76.4
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 5.9e-220 767.7 529 75.2
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 7.7e-220 767.3 511 77.9
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.1e-218 763.5 522 76.1
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.7e-217 758.8 550 72.5
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 6.1e-217 757.7 511 77.1
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.9e-217 757.3 522 75.3
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 1.8e-216 756.1 533 74.7
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.3e-216 755.7 522 75.1
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 6.7e-216 754.2 477 81.3
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.5e-215 753.1 503 77.1
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.7e-214 749.6 501 76.6
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 2.2e-214 749.2 539 72.7
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 4.8e-214 748.0 527 74.8
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.1e-213 746.9 523 73.4
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.4e-213 745.7 535 73.1
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.4e-213 745.7 531 72.7
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 7.0e-213 744.2 546 72.5
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.7e-211 739.6 531 72.9
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 4.2e-210 734.9 605 66.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 4.2e-210 734.9 624 65.5
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.6e-209 731.9 542 71.8
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.3e-207 725.3 505 74.9
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 4.4e-207 724.9 504 73.6
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.0e-196 689.5 521 68.7
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 5.9e-196 688.0 496 72.4
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.2e-195 686.0 499 69.9
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.8e-195 685.3 595 64.0
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 9.4e-194 680.6 535 68.6
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.6e-193 679.9 504 68.5
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 6.8e-192 674.5 500 70.8
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 1.1e-189 667.2 560 63.9
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 6.6e-187 657.9 435 78.2
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 3.3e-186 655.6 424 80.0
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.0e-179 631.7 495 65.1
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.0e-179 631.7 495 65.1
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 9.8e-175 617.5 470 70.4
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 9.2e-173 610.9 444 69.8
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 9.2e-165 584.3 399 75.7
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 2.1e-164 583.2 517 58.6
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 8.4e-158 561.2 486 59.9
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 3.0e-155 552.7 360 78.9
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 4.3e-154 548.9 383 74.7
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 5.6e-154 548.5 372 78.5
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 3.1e-144 516.2 331 78.9
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 8.7e-131 471.5 321 76.3
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.0e-118 431.4 249 83.9
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.9e-117 427.2 249 83.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 4.3e-114 416.0 456 56.1
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 2.1e-108 397.1 505 45.5
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 9.1e-104 381.7 240 80.4
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.9e-101 374.0 487 43.7
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.8e-89 333.6 490 41.0
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.5e-79 299.7 330 54.8
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 5.7e-74 282.7 173 79.8
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-57 226.9 509 35.6
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 6.2e-52 209.5 248 50.4
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.4e-51 208.4 491 35.2
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 8.3e-49 199.1 504 33.7
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.7e-47 194.1 115 87.8
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.0e-46 192.2 118 79.7
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 5.8e-42 176.4 294 41.8
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 1.9e-40 171.4 466 33.0
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 3.1e-35 154.1 489 31.3
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-34 151.0 451 32.4
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 6.0e-31 139.8 293 37.9
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-30 138.3 289 38.8
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-29 134.4 331 36.3
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 4.8e-28 130.2 302 34.1
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 8.1e-28 129.4 86 68.6
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-24 117.5 210 39.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-23 115.5 367 32.4
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 3.5e-23 114.0 220 40.0
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 1.0e-22 112.5 159 42.8
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.8e-22 111.7 275 32.0
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 3.3e-21 107.5 159 41.5
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-20 104.4 208 38.9
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.3e-19 100.1 359 30.1
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 9.0e-19 99.4 208 38.9
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 9.0e-19 99.4 328 28.7
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.5e-18 98.6 74 62.2
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 2.0e-18 98.2 396 29.8
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 7.6e-18 96.3 396 29.5
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 7.6e-18 96.3 239 32.2
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.9e-17 94.4 59 71.2
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 3.9e-14 84.0 326 30.1
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 1.4e-11 75.5 289 31.1
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 5.8e-10 70.1 158 34.8
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 2.3e-06 58.2 32 81.2
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 8.7e-06 56.2 57 50.9


User provided reference genes

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