Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 3.2e-221 771.5 412 100.0
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 5.8e-175 617.8 410 83.4
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 6.9e-168 594.3 416 76.9
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 2.0e-167 592.8 414 78.3
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 4.3e-162 575.1 418 74.6
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.9e-158 562.4 433 73.2
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 8.5e-158 560.8 431 72.9
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.1e-154 550.4 409 74.8
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 2.0e-151 539.7 412 73.1
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 5.1e-147 525.0 422 71.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.8e-145 519.2 350 76.0
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 3.1e-144 515.8 324 82.7
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 5.3e-144 515.0 331 78.5
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 4.5e-143 511.9 332 78.0
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 3.8e-142 508.8 390 69.2
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 4.2e-141 505.4 389 68.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 5.5e-141 505.0 410 66.6
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 4.7e-140 501.9 355 72.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.0e-139 500.7 391 68.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 5.2e-139 498.4 394 68.8
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 5.2e-139 498.4 394 69.0
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 6.7e-139 498.0 358 72.1
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 2.0e-138 496.5 421 64.6
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 2.6e-138 496.1 386 68.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.3e-137 493.8 409 67.0
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.7e-137 493.4 389 68.4
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.2e-137 493.0 342 73.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 3.7e-137 492.3 389 66.6
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.8e-137 491.9 344 76.7
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 4.8e-137 491.9 337 74.5
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 6.3e-137 491.5 342 75.4
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.1e-136 490.7 424 63.4
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 9.1e-136 487.6 341 72.7
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 9.1e-136 487.6 367 67.6
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.6e-135 486.9 378 67.7
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 2.0e-135 486.5 378 68.5
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 3.5e-135 485.7 393 65.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 7.7e-135 484.6 340 73.2
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.0e-134 484.2 344 73.0
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 2.2e-134 483.0 373 67.0
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 5.0e-134 481.9 340 73.5
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 1.5e-133 480.3 418 61.2
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.9e-133 479.9 430 62.1
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 9.4e-133 477.6 337 71.5
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.7e-132 476.1 379 67.5
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 3.6e-132 475.7 347 72.0
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 6.1e-132 474.9 415 64.1
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 6.1e-132 474.9 378 68.5
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 8.0e-132 474.6 349 71.6
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.3e-131 473.0 369 70.7
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 3.0e-131 472.6 348 69.5
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.0e-131 472.6 347 71.5
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.0e-131 472.6 347 71.8
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 4.0e-131 472.2 297 79.1
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 5.2e-131 471.9 344 69.8
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 6.8e-131 471.5 385 67.3
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 6.8e-131 471.5 345 72.2
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 1.2e-130 470.7 412 65.3
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.6e-130 469.5 347 70.6
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 3.4e-130 469.2 418 61.7
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 9.8e-130 467.6 293 80.5
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 9.8e-130 467.6 347 71.2
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.2e-129 466.5 324 72.5
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 6.3e-129 464.9 330 72.1
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 8.3e-129 464.5 347 70.6
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.1e-128 464.2 368 66.0
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.4e-128 463.8 386 67.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 7.0e-128 461.5 396 63.6
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 2.0e-127 459.9 349 71.1
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.5e-127 459.1 392 63.3
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.9e-127 458.4 421 59.6
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.5e-125 453.8 296 76.4
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 3.6e-124 449.1 331 70.4
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.0e-123 447.6 384 63.0
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.4e-123 447.2 331 70.7
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.5e-122 443.7 351 63.8
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 9.8e-122 441.0 281 78.6
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 1.3e-121 440.7 294 75.9
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 2.8e-121 439.5 277 80.5
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 3.1e-120 436.0 351 65.2
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 4.5e-119 432.2 355 63.7
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.9e-118 429.5 541 48.2
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 3.8e-118 429.1 382 60.5
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 2.6e-114 416.4 352 63.4
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 3.6e-108 396.0 261 76.6
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.2e-107 392.1 441 51.2
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 5.2e-107 392.1 339 62.8
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 2.2e-105 386.7 293 74.1
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.9e-104 383.6 378 56.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 4.1e-104 382.5 292 68.2
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.1e-104 382.5 422 50.0
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 3.5e-103 379.4 402 55.5
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 3.3e-101 372.9 248 74.2
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 8.9e-99 364.8 357 57.7
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.2e-98 364.4 345 55.4
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 3.7e-97 359.4 351 55.0
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 8.6e-94 348.2 411 50.1
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 3.6e-92 342.8 311 60.5
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.4e-91 340.9 261 69.7
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.0e-90 337.0 232 73.7
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 7.6e-90 335.1 251 70.9
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 7.6e-90 335.1 201 92.5
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.7e-89 334.0 253 70.4
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 3.7e-89 332.8 218 83.9
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 9.6e-85 318.2 213 79.3
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 7.8e-79 298.5 305 49.5
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.3e-76 291.2 384 47.4
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 6.2e-76 288.9 271 57.9
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.1e-72 278.1 293 56.0
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 2.8e-68 263.5 156 80.8
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 3.4e-66 256.5 225 64.4
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 3.1e-59 233.4 158 69.0
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 8.7e-54 215.3 144 70.1
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 4.8e-36 156.4 116 68.1
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-35 154.8 108 86.1
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.5e-34 151.4 123 62.6
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.4e-32 144.8 96 74.0
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 5.5e-24 116.3 136 50.7
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 4.0e-22 110.2 92 65.2
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 4.1e-19 100.1 85 64.7
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.7e-18 97.4 156 51.9
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 3.1e-11 73.9 81 56.8
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 5.4e-11 73.2 35 97.1
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-09 68.9 63 61.9


User provided reference genes

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