Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 3.2e-78 295.0 151 100.0
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 2.4e-70 268.9 151 89.4
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 6.0e-69 264.2 151 88.1
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 3.9e-68 261.5 151 86.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 8.7e-68 260.4 151 85.4
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 1.1e-67 260.0 152 87.5
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.6e-66 256.1 149 88.6
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.6e-66 256.1 149 88.6
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 6.2e-66 254.2 140 90.7
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 2.4e-65 252.3 140 88.6
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 3.1e-65 251.9 152 82.9
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 4.0e-65 251.5 140 89.3
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 6.9e-65 250.8 139 89.2
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 6.9e-65 250.8 138 90.6
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 6.9e-65 250.8 140 90.7
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 9.0e-65 250.4 140 89.3
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 9.0e-65 250.4 140 89.3
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-64 250.0 139 87.8
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.2e-64 250.0 140 89.3
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.2e-64 250.0 150 86.0
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 1.5e-64 249.6 140 87.9
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 1.5e-64 249.6 140 88.6
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.0e-64 249.2 140 87.1
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.0e-64 249.2 140 87.1
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 2.0e-64 249.2 140 87.9
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 2.0e-64 249.2 140 88.6
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 2.6e-64 248.8 140 85.0
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 2.6e-64 248.8 140 86.4
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 2.6e-64 248.8 140 89.3
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 2.6e-64 248.8 152 82.2
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 4.5e-64 248.1 140 88.6
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 4.5e-64 248.1 140 86.4
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 5.8e-64 247.7 140 86.4
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 7.6e-64 247.3 148 84.5
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 9.9e-64 246.9 140 87.9
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 9.9e-64 246.9 139 88.5
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 9.9e-64 246.9 139 87.1
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.3e-63 246.5 140 87.1
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.3e-63 246.5 139 87.8
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 1.7e-63 246.1 140 88.6
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 1.7e-63 246.1 150 85.3
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.7e-63 246.1 140 86.4
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 2.2e-63 245.7 149 83.2
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 2.2e-63 245.7 140 87.9
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 2.2e-63 245.7 140 88.6
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 2.2e-63 245.7 149 83.2
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.2e-63 245.7 139 89.2
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 2.9e-63 245.4 139 87.8
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.9e-63 245.4 139 87.8
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 2.9e-63 245.4 153 81.7
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 3.8e-63 245.0 141 86.5
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 3.8e-63 245.0 139 87.8
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 3.8e-63 245.0 138 87.0
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.8e-63 245.0 148 83.8
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 3.8e-63 245.0 138 89.1
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 3.8e-63 245.0 139 88.5
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 4.9e-63 244.6 147 83.7
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 6.4e-63 244.2 139 87.1
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 6.4e-63 244.2 139 88.5
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 6.4e-63 244.2 139 87.8
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 6.4e-63 244.2 139 87.1
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.1e-62 243.4 147 82.3
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.1e-62 243.4 139 86.3
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.9e-62 242.7 139 87.1
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 1.9e-62 242.7 140 87.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.9e-62 242.7 138 87.0
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 2.4e-62 242.3 140 87.1
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.4e-62 242.3 148 83.1
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 2.4e-62 242.3 151 80.1
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.4e-62 242.3 140 85.7
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 3.2e-62 241.9 139 86.3
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 4.2e-62 241.5 148 81.1
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 5.4e-62 241.1 139 87.8
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 7.1e-62 240.7 139 87.1
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 7.1e-62 240.7 139 84.9
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 9.3e-62 240.4 140 84.3
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.2e-61 240.0 141 83.0
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 1.6e-61 239.6 139 85.6
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.6e-61 239.6 135 88.1
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 1.6e-61 239.6 138 87.7
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.6e-61 239.6 138 87.0
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 2.1e-61 239.2 140 86.4
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 2.7e-61 238.8 138 87.0
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 2.7e-61 238.8 149 82.6
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.5e-61 238.4 141 83.0
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 3.5e-61 238.4 140 86.4
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 3.5e-61 238.4 137 87.6
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 6.0e-61 237.7 151 81.5
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 6.0e-61 237.7 139 85.6
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 6.0e-61 237.7 139 85.6
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 1.0e-60 236.9 138 84.8
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.8e-60 236.1 150 82.0
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.0e-60 235.3 150 78.0
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 3.9e-60 235.0 139 84.2
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.1e-59 233.4 139 84.9
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.5e-59 232.3 139 82.7
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 5.6e-59 231.1 140 84.3
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 9.6e-59 230.3 139 80.6
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.1e-58 229.2 139 83.5
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 2.8e-58 228.8 139 82.7
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 3.6e-58 228.4 137 83.2
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 3.6e-58 228.4 168 71.4
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 6.2e-58 227.6 139 82.0
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 8.1e-58 227.3 139 81.3
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.1e-57 226.9 134 87.3
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 4.0e-57 224.9 151 76.2
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.2e-56 223.4 140 77.9
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.5e-56 223.0 138 81.9
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 2.0e-56 222.6 137 81.0
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.0e-56 222.6 179 66.5
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 5.8e-56 221.1 138 79.7
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 1.4e-54 216.5 140 80.0
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.4e-54 216.5 167 67.7
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 6.0e-53 211.1 138 75.4
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.3e-52 209.9 127 81.9
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.5e-51 205.7 122 83.6
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 1.1e-49 200.3 145 69.0
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 2.4e-49 199.1 137 73.0
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 4.2e-46 188.3 138 65.9
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 5.9e-40 167.9 140 61.4
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 6.5e-39 164.5 141 64.5
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.1e-37 159.5 121 69.4
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 1.8e-36 156.4 121 69.4
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 2.3e-36 156.0 121 68.6
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 9.7e-35 150.6 82 85.4
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 1.6e-34 149.8 120 66.7
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.6e-34 149.8 121 65.3
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.9e-33 144.4 121 62.8
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 3.8e-31 138.7 112 63.4
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.1e-30 137.1 148 52.7
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 1.1e-30 137.1 127 61.4
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 1.9e-30 136.3 103 66.0
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 4.6e-29 131.7 137 49.6
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.3e-26 123.6 80 77.5
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 2.0e-24 116.3 88 67.0
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 2.9e-23 112.5 82 65.9
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.0e-20 102.4 66 81.8
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 3.0e-20 102.4 68 79.4
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 3.0e-20 102.4 70 71.4
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 3.9e-20 102.1 59 84.7
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 6.7e-20 101.3 66 78.8
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 6.7e-20 101.3 63 81.0
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 8.8e-20 100.9 69 69.6
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.1e-19 100.5 85 65.9
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 1.1e-19 100.5 78 71.8
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.4e-19 98.6 60 83.3
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-18 96.7 66 77.3
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-18 96.7 76 71.1
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 2.2e-18 96.3 71 71.8
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 2.2e-18 96.3 58 84.5
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 2.8e-18 95.9 69 71.0
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 8.2e-18 94.4 59 79.7
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 2.4e-17 92.8 56 71.4
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 2.5e-14 82.8 66 65.2
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.0e-12 77.4 63 63.5
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 5.2e-12 75.1 102 49.0
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 1.5e-11 73.6 118 41.5
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 9.7e-11 70.9 45 77.8
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 2.8e-10 69.3 44 77.3
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 7.0e-09 64.7 86 47.7
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.1e-09 64.3 57 61.4
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 2.7e-08 62.8 37 78.4
Eucgr.L03680 Eucalyptus grandis HOM05D004245 ORTHO05D004783 5.5e-06 55.1 99 39.4
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.5e-06 55.1 47 61.7
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 7.2e-06 54.7 37 78.4
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 7.2e-06 54.7 37 78.4
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 9.4e-06 54.3 30 80.0
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 9.4e-06 54.3 30 80.0


User provided reference genes

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