Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 9.5e-209 729.9 370 100.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.9e-135 484.6 394 67.8
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.7e-85 320.5 207 82.1
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.3e-84 315.8 197 82.2
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.6e-81 306.6 201 83.1
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 4.4e-81 305.8 192 84.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 4.3e-76 289.3 164 87.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.4e-73 279.6 209 73.2
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.7e-72 277.3 175 81.1
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.6e-70 270.8 163 84.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.1e-70 270.4 187 78.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.3e-69 266.9 217 71.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 3.0e-69 266.5 159 84.9
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 2.8e-67 260.0 169 80.5
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 6.2e-67 258.8 164 83.5
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.3e-66 256.9 198 68.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.5e-65 254.2 207 67.1
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.6e-65 253.4 171 76.6
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 3.7e-64 249.6 165 75.8
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.4e-63 247.7 159 78.0
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 4.1e-63 246.1 159 78.0
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.4e-63 245.7 185 71.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.2e-62 244.6 170 73.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-62 243.4 170 74.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 4.6e-62 242.7 205 65.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 6.0e-62 242.3 191 66.0
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 7.8e-62 241.9 173 73.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.3e-61 241.1 200 66.5
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.3e-61 241.1 162 75.9
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.3e-61 240.4 169 72.8
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 5.1e-61 239.2 192 68.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 6.6e-61 238.8 167 75.4
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.1e-60 238.0 179 71.5
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-60 237.7 185 68.6
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.9e-60 237.3 182 69.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.2e-59 234.6 168 70.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 1.2e-59 234.6 172 69.2
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.2e-59 234.6 159 74.2
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.1e-59 233.8 163 73.0
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 2.8e-59 233.4 165 73.9
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 2.4e-58 230.3 167 71.9
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.0e-58 229.6 162 71.6
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 4.0e-58 229.6 187 65.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.2e-58 229.2 173 67.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 6.8e-58 228.8 188 65.4
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 8.9e-58 228.4 179 67.0
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 2.0e-57 227.3 166 71.1
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.6e-57 226.9 175 66.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 2.6e-57 226.9 201 64.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.4e-57 226.5 167 70.1
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.4e-57 226.5 167 70.1
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 3.4e-57 226.5 167 70.7
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 4.4e-57 226.1 166 70.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.4e-57 226.1 162 73.5
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 4.4e-57 226.1 163 69.9
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 7.6e-57 225.3 157 74.5
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 7.6e-57 225.3 165 70.9
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 7.6e-57 225.3 204 61.8
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 9.9e-57 224.9 164 71.3
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 9.9e-57 224.9 166 69.9
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.3e-56 224.6 167 69.5
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.7e-56 224.2 160 73.1
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.2e-56 223.8 208 59.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 4.9e-56 222.6 186 64.5
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 8.4e-56 221.9 159 73.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.1e-55 221.5 172 68.0
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.2e-55 219.9 246 54.5
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.2e-55 219.5 164 68.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.3e-55 218.4 161 69.6
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.3e-55 218.4 172 66.9
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.7e-54 216.9 164 68.9
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.0e-54 215.7 159 71.1
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 3.9e-53 213.0 187 62.0
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 5.1e-53 212.6 164 66.5
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-52 211.1 189 60.8
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 7.3e-52 208.8 167 66.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.8e-51 206.8 162 67.9
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.6e-51 206.5 161 63.4
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 6.2e-51 205.7 154 69.5
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 6.2e-51 205.7 159 65.4
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 4.0e-50 203.0 162 64.2
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.2e-49 201.4 121 82.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.6e-49 200.3 162 62.3
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 4.4e-49 199.5 121 80.2
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.9e-48 196.8 162 60.5
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.8e-48 196.4 159 62.3
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.8e-48 196.4 201 56.7
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 8.4e-48 195.3 164 65.2
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-47 194.9 113 85.8
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.1e-47 194.9 112 85.7
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.4e-47 194.5 159 65.4
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.4e-47 193.7 174 60.3
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 4.2e-47 193.0 113 83.2
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 7.1e-47 192.2 115 80.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 2.1e-46 190.7 112 82.1
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.1e-46 190.7 116 81.0
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.6e-46 189.5 130 72.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 4.6e-46 189.5 139 71.9
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.6e-46 189.5 111 82.9
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 7.9e-46 188.7 112 83.9
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 7.9e-46 188.7 111 85.6
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 5.1e-45 186.0 113 84.1
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.9e-44 184.1 113 81.4
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 7.4e-44 182.2 113 78.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 9.6e-44 181.8 162 59.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 9.6e-44 181.8 112 77.7
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.3e-43 181.4 112 77.7
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.2e-43 179.1 160 58.1
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 5.3e-42 176.0 141 64.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 5.3e-42 176.0 178 55.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.9e-42 175.6 172 52.9
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 6.9e-42 175.6 111 79.3
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.5e-41 174.5 159 56.0
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-40 171.0 149 58.4
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.8e-40 169.9 164 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 4.9e-40 169.5 183 52.5
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.4e-39 167.2 137 63.5
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.2e-39 166.4 112 72.3
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 7.1e-39 165.6 184 47.3
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 6.0e-38 162.5 163 59.5
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.1e-36 158.3 170 52.4
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.4e-34 150.6 200 51.0
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 3.1e-34 150.2 147 53.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 5.8e-33 146.0 156 50.6
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.0e-32 145.2 96 70.8
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.9e-32 142.9 195 46.2
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 6.5e-32 142.5 130 53.8
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.2e-31 139.8 76 84.2
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.5e-31 139.4 111 67.6
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.1e-30 137.5 112 59.8
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.1e-28 131.7 194 45.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.3e-27 128.3 141 54.6
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 8.2e-27 125.6 141 53.2
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.1e-26 125.2 116 62.1
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.9e-25 119.4 162 45.1
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 7.6e-25 119.0 69 81.2
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 3.2e-23 113.6 95 65.3
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 4.6e-22 109.8 120 56.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.1e-22 109.4 121 56.2
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.1e-22 109.4 70 77.1
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-21 108.2 78 60.3
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.3e-21 107.5 71 74.6
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.9e-20 104.4 156 43.6
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.3e-19 99.4 92 56.5
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.8e-18 97.8 155 41.9
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.9e-15 87.8 55 76.4
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.1e-12 78.6 50 78.0
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.7e-11 74.7 88 47.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 5.3e-10 69.7 37 86.5
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.2e-09 68.6 47 61.7
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.0e-09 67.8 40 80.0
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 3.4e-09 67.0 35 82.9
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.0e-08 65.5 70 48.6
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.0e-08 65.5 60 56.7
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.0e-08 65.5 65 58.5
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 1.0e-08 65.5 51 60.8
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 2.2e-08 64.3 77 45.5
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 6.5e-08 62.8 35 82.9
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.5e-08 62.8 44 72.7
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-07 62.0 97 41.2
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.1e-07 62.0 67 55.2
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 2.5e-07 60.8 49 57.1
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 7.2e-07 59.3 65 46.2
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 7.2e-07 59.3 35 77.1
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.4e-07 58.9 65 53.8


User provided reference genes

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