Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.4e-281 972.2 460 100.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.4e-256 887.9 460 92.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.6e-240 835.1 460 86.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.1e-236 820.8 460 85.2
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 8.1e-226 786.9 461 82.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.8e-224 780.8 460 81.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.7e-223 779.2 460 82.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 9.3e-222 773.5 460 81.1
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 6.0e-205 717.6 453 74.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.0e-204 716.8 452 75.9
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.3e-204 716.5 453 74.2
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 6.7e-204 714.1 452 73.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.5e-203 712.2 453 74.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 7.4e-203 710.7 454 74.2
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.6e-202 709.5 452 74.3
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.8e-202 708.8 453 74.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 8.2e-202 707.2 452 73.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.1e-201 705.3 465 73.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.1e-201 704.9 452 74.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.9e-201 704.1 452 73.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 9.0e-201 703.7 465 72.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.5e-200 703.0 452 73.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.5e-200 703.0 452 73.5
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.5e-200 703.0 459 73.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 3.4e-200 701.8 452 73.7
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.5e-200 701.4 465 72.7
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.9e-200 701.0 452 73.9
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.7e-199 699.5 466 72.7
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.9e-199 698.7 459 73.0
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 5.0e-199 698.0 452 73.9
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.5e-199 697.6 452 72.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.1e-198 696.8 452 72.3
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.2e-198 695.3 452 73.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 5.5e-198 694.5 452 73.5
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 5.5e-198 694.5 454 72.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 7.9e-197 690.6 454 72.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.0e-196 690.3 453 71.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.9e-196 688.3 453 71.7
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.9e-195 686.0 449 72.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.6e-194 682.9 480 69.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 8.2e-194 680.6 449 70.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.4e-193 679.9 452 71.9
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.4e-193 679.9 452 69.9
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.4e-193 679.1 451 72.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.9e-193 677.6 447 72.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.5e-192 676.4 452 69.5
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 4.5e-192 674.9 452 70.6
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.2e-191 672.5 452 71.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 2.5e-190 669.1 452 69.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 2.1e-189 666.0 447 72.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.7e-189 665.6 452 70.8
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.0e-187 659.4 459 68.6
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.8e-186 654.8 456 69.1
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.3e-186 654.4 468 68.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 8.2e-186 654.1 452 69.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.1e-185 652.1 447 71.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.3e-185 651.4 453 69.5
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.6e-184 649.0 453 68.2
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.4e-184 648.7 467 68.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-183 646.4 469 68.2
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.7e-183 646.4 462 67.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.2e-183 646.0 432 71.3
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.2e-182 642.1 468 67.9
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.7e-181 639.0 434 70.0
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 7.9e-181 637.5 431 70.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.0e-179 632.9 449 67.3
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.6e-179 632.5 389 76.1
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 9.7e-179 630.6 452 67.0
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.7e-178 629.8 447 67.1
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.2e-178 629.4 433 68.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.7e-178 628.6 433 69.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 8.2e-178 627.5 453 66.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 9.1e-177 624.0 447 66.9
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 8.5e-175 617.5 469 65.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.5e-174 615.9 462 63.4
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 4.2e-174 615.1 462 63.2
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.5e-174 614.8 452 65.9
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 7.2e-174 614.4 460 66.3
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-173 613.6 459 63.2
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.6e-173 613.2 459 63.4
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.6e-173 612.1 459 62.5
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 3.6e-173 612.1 458 61.6
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 8.0e-173 610.9 454 63.4
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 8.0e-173 610.9 450 66.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.0e-172 608.6 458 66.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.2e-172 608.2 463 64.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 6.7e-172 607.8 456 63.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 6.7e-172 607.8 456 63.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.1e-171 607.1 458 62.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.2e-170 602.8 457 64.1
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.8e-170 602.4 461 62.3
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.7e-170 602.1 458 62.7
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.7e-170 602.1 468 61.3
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 7.0e-169 597.8 471 61.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.1e-166 590.5 456 62.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 5.5e-166 588.2 494 59.7
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 6.8e-164 581.3 460 63.9
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-163 580.5 366 74.9
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 4.4e-163 578.6 462 62.8
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.7e-163 578.2 363 74.7
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-162 576.6 468 59.4
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.7e-162 576.6 462 59.7
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.8e-161 573.2 458 63.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.0e-160 569.7 386 70.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.3e-159 567.0 406 68.7
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.0e-156 555.8 426 64.8
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.2e-155 553.9 517 57.3
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.5e-155 553.5 423 62.6
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-155 553.5 429 62.5
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 7.0e-153 544.7 456 56.8
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.6e-152 543.5 490 55.9
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 6.1e-149 531.6 468 58.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 6.4e-146 521.5 316 81.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.4e-145 519.6 416 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 9.2e-145 517.7 467 55.5
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 7.8e-144 514.6 468 50.9
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 5.0e-143 511.9 460 51.3
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-140 503.8 358 69.6
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.9e-130 469.5 427 59.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 2.1e-128 463.4 434 56.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.5e-118 429.9 486 48.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.2e-117 425.2 316 66.5
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.4e-116 424.1 373 56.8
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.4e-115 419.5 373 55.8
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 6.0e-112 408.7 326 63.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-108 397.9 453 49.9
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 5.4e-105 385.6 286 65.7
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.1e-102 377.9 399 45.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-97 361.3 183 95.6
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.9e-87 326.2 442 40.5
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 4.1e-84 316.2 445 39.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 5.9e-83 312.4 214 71.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.5e-82 308.5 302 55.3
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 7.2e-81 305.4 207 69.1
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 4.5e-75 286.2 218 72.0
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.5e-49 201.4 145 66.2
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.7e-48 197.2 220 46.8
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-47 193.4 207 49.8
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.2e-46 191.8 157 61.1
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.2e-45 187.6 230 47.0
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-43 180.6 94 92.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-41 174.1 241 44.4
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-40 171.8 239 44.4
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 7.0e-36 156.0 85 82.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.0e-35 154.5 109 67.9
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.3e-34 151.0 260 35.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.1e-28 130.2 239 38.1
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-27 128.6 70 90.0
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.6e-22 110.9 62 80.6
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.9e-21 107.5 85 61.2
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 9.2e-20 102.4 128 40.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.0e-18 97.4 71 60.6
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-11 75.1 80 52.5
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.6e-09 66.6 36 80.6
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-07 61.2 42 64.3
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.6e-06 57.8 61 52.5


User provided reference genes

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