Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 4.1e-122 441.4 227 100.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 5.8e-116 421.0 227 93.0
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.3e-109 399.1 214 93.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.0e-108 396.0 265 78.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 86.3
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.3e-104 383.3 227 86.3
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 85.9
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 84.6
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.7
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 4.3e-103 378.3 227 83.3
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 7.3e-103 377.5 220 86.4
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 7.3e-103 377.5 226 85.4
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 82.4
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.1e-102 375.9 215 87.4
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 82.8
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.8e-101 372.9 220 82.7
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 81.9
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.8e-101 372.9 220 85.5
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.4e-101 372.5 225 83.1
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 84.6
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.9
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.9
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.5
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 4.0e-101 371.7 225 83.6
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 5.2e-101 371.3 225 83.1
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 82.8
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 8.9e-101 370.5 227 81.5
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 8.9e-101 370.5 227 82.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.5e-100 369.8 220 84.5
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.5e-100 369.8 221 83.7
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.1
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.6e-100 369.0 220 84.5
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.4e-100 368.2 225 82.2
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 81.5
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 7.6e-100 367.5 220 83.2
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 9.9e-100 367.1 228 81.6
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 9.9e-100 367.1 221 82.8
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.9
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.5
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.7e-99 366.3 221 83.7
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.7e-99 366.3 219 82.2
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 220 84.1
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 220 84.5
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 80.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.9e-99 365.5 220 84.5
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 3.8e-99 365.2 230 80.9
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.8e-99 365.2 220 84.5
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 8.4e-99 364.0 221 83.3
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.1e-98 363.6 221 82.8
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.4e-98 363.2 220 82.7
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-98 363.2 219 82.6
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.4e-98 363.2 217 83.9
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.9e-98 362.8 219 82.2
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 78.4
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.9e-98 362.8 215 83.3
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.4e-98 362.5 219 82.2
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.4e-98 362.5 221 82.8
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.4e-98 362.5 219 84.0
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.4e-98 362.5 220 83.6
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.4e-98 362.5 227 80.6
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 4.2e-98 361.7 220 82.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 7.1e-98 360.9 217 82.5
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 80.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 78.9
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.2e-97 360.1 219 81.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.6e-97 359.8 217 82.0
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.6e-97 359.8 217 82.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.6e-97 359.8 229 79.5
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.6e-97 359.8 229 79.9
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 4.6e-97 358.2 217 81.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.6e-97 358.2 227 79.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.0e-96 357.1 227 78.0
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.0e-96 357.1 224 80.4
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.0e-96 357.1 213 83.6
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 1.3e-96 356.7 227 78.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.3e-96 356.7 218 81.2
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.3e-96 356.7 227 78.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.7e-96 356.3 214 81.3
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 77.5
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.3e-96 355.9 222 80.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.0e-96 355.5 215 81.4
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 5.1e-96 354.8 224 79.9
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 6.6e-96 354.4 216 82.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 8.7e-96 354.0 227 78.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 8.7e-96 354.0 224 79.5
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.1e-95 353.6 223 80.3
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.1e-95 353.6 227 78.9
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.3e-95 352.1 219 82.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.3e-95 351.7 207 84.5
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 4.3e-95 351.7 222 79.7
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 5.6e-95 351.3 227 76.7
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.3e-94 350.1 215 81.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 4.8e-94 348.2 227 77.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 8.1e-94 347.4 220 78.6
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.1e-94 347.4 233 76.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-93 347.1 207 83.1
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 2.4e-93 345.9 219 78.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.4e-93 345.9 213 79.8
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.0e-93 345.1 206 83.0
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.0e-93 344.0 213 80.8
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 5.8e-92 341.3 215 79.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 5.8e-92 341.3 218 80.7
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 9.9e-92 340.5 205 82.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.3e-91 340.1 205 82.9
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.2e-91 339.3 205 82.0
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.2e-91 339.3 204 82.8
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.1e-90 337.0 203 82.3
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 9.3e-90 334.0 210 80.0
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-89 333.2 195 85.6
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 4.6e-89 331.6 213 77.5
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 7.8e-89 330.9 227 75.3
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 4.3e-87 325.1 226 73.9
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.1e-85 318.9 202 80.2
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 9.0e-85 317.4 214 74.3
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.8e-84 314.7 190 84.2
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.4e-82 310.1 191 80.1
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 4.2e-82 308.5 212 72.6
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 9.3e-82 307.4 227 71.4
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.3e-78 297.0 183 84.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.1e-78 296.2 195 76.9
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 8.1e-78 294.3 214 69.6
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.5e-76 290.0 163 89.0
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 4.9e-75 285.0 224 65.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.5e-71 273.5 216 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 9.0e-69 264.2 209 65.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.0e-68 263.1 163 79.1
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.2e-67 259.6 192 72.4
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.4e-66 256.9 229 62.0
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 3.5e-65 252.3 227 61.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.9e-64 248.8 159 76.1
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.1e-64 248.4 196 68.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 5.1e-64 248.4 160 76.2
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 8.2e-62 241.1 237 54.9
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 4.1e-61 238.8 201 65.2
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.0e-60 236.5 146 78.8
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 7.2e-58 228.0 164 72.0
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.7e-54 215.7 215 51.6
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.7e-49 199.5 131 74.0
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 5.2e-40 168.7 99 81.8
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 2.0e-39 166.8 115 74.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.1e-37 157.9 114 69.3
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.4e-29 132.1 87 74.7
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 5.4e-29 132.1 91 70.3
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.5e-28 129.4 109 63.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 7.2e-26 121.7 135 52.6
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.0e-24 116.3 113 57.5
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.0e-20 103.6 63 76.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.7e-17 92.4 51 88.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.4e-13 80.9 139 41.0
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.4e-13 80.1 70 62.9
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.7e-12 76.6 67 56.7
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.5e-10 70.1 114 41.2
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 4.3e-10 69.3 206 28.2
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-07 60.5 63 54.0


User provided reference genes

Program Settings