Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 3.1e-259 897.9 438 100.0
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.5e-234 814.7 438 90.0
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 4.2e-224 781.2 444 86.5
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 6.8e-214 747.3 438 84.2
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-213 746.5 438 84.2
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.9e-208 729.2 440 81.6
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 5.6e-208 727.6 442 80.8
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.6e-207 726.1 442 81.4
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 9.2e-203 710.3 445 80.7
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.2e-194 683.3 443 77.7
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.7e-194 682.2 464 74.4
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.6e-183 646.4 386 80.3
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 3.6e-183 645.2 335 91.6
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 3.8e-180 635.2 445 69.9
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.9e-179 632.9 398 75.9
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 4.2e-179 631.7 380 77.4
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 5.4e-179 631.3 384 77.3
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.7e-177 626.3 464 65.9
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 6.6e-177 624.4 392 76.0
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.5e-176 623.2 465 65.2
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 4.3e-176 621.7 449 68.2
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 4.3e-176 621.7 449 68.4
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 7.3e-176 620.9 411 72.0
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.6e-175 619.8 452 67.9
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.2e-175 617.8 454 68.9
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 6.2e-175 617.8 423 71.2
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 8.1e-175 617.5 384 75.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.4e-174 616.7 380 76.1
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.4e-174 616.7 383 74.9
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 1.8e-174 616.3 458 67.9
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.0e-173 612.8 394 73.9
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.6e-173 612.5 410 71.2
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.6e-173 612.5 378 75.1
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 3.4e-173 612.1 407 72.2
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.4e-173 611.7 458 67.7
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 5.8e-173 611.3 407 71.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 5.8e-173 611.3 406 72.4
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 9.9e-173 610.5 406 71.9
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.7e-172 609.8 407 72.5
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.9e-171 606.3 435 67.8
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 3.2e-171 605.5 392 73.7
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 7.1e-171 604.4 457 67.2
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.2e-170 603.6 458 67.7
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 3.5e-170 602.1 454 65.6
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.3e-169 599.4 462 66.7
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.1e-169 598.2 454 67.6
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 5.1e-169 598.2 454 65.4
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 5.1e-169 598.2 454 65.6
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.6e-169 597.8 454 65.9
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.9e-168 596.3 454 65.9
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.5e-168 595.9 415 69.9
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.3e-168 595.5 389 73.3
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 1.1e-166 590.5 450 64.2
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 2.4e-166 589.3 384 72.1
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 6.9e-166 587.8 483 63.6
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 9.0e-166 587.4 413 69.5
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.2e-165 587.0 384 72.7
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 2.6e-165 585.9 384 72.9
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.4e-165 585.5 426 68.1
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.8e-165 584.7 385 72.7
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 9.9e-165 583.9 384 71.9
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.3e-164 583.6 384 72.7
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 3.8e-164 582.0 381 71.9
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 3.8e-164 582.0 441 66.0
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 3.8e-164 582.0 423 66.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 6.4e-164 581.3 411 67.9
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.4e-163 580.1 454 65.2
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 2.4e-163 579.3 396 70.7
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.8e-161 573.2 384 70.3
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.3e-159 567.0 334 79.0
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.1e-159 564.3 466 64.2
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 1.8e-158 563.1 444 65.1
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.4e-158 562.8 419 66.8
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 2.4e-158 562.8 366 73.2
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.4e-158 562.8 459 62.1
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 4.0e-158 562.0 452 63.7
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 4.0e-158 562.0 459 61.4
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 6.9e-158 561.2 467 61.5
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 2.0e-157 559.7 407 66.6
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 7.6e-157 557.8 479 62.6
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.9e-156 555.8 393 69.2
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 1.3e-151 540.4 404 66.1
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.1e-151 539.7 414 63.8
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.1e-150 537.3 368 67.7
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 2.4e-150 536.2 507 56.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 4.2e-147 525.4 366 66.1
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 1.2e-146 523.9 452 61.3
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 6.1e-146 521.5 368 65.8
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.3e-145 520.4 382 67.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 3.1e-142 509.2 397 64.2
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 4.1e-142 508.8 384 65.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 7.4e-136 488.0 318 70.4
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.7e-135 485.7 438 59.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 2.0e-133 479.9 370 63.5
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.0e-133 479.9 408 59.8
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.2e-132 476.5 379 62.3
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 3.6e-130 469.2 448 55.8
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.8e-129 466.8 284 77.8
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 6.1e-122 441.8 358 59.5
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.2e-121 438.7 428 56.1
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.7e-119 433.7 412 56.6
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 6.3e-119 431.8 426 54.9
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 8.5e-116 421.4 434 52.5
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 3.4e-112 409.5 209 92.8
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 7.5e-112 408.3 268 73.1
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.6e-109 400.6 431 51.5
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.1e-102 375.9 301 63.8
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 9.2e-94 348.2 213 73.7
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 8.6e-92 341.7 319 58.3
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.0e-89 334.7 241 71.4
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.3e-89 333.6 384 46.4
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.2e-88 331.3 361 47.6
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.4e-88 329.3 295 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.5e-83 313.5 359 46.0
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 8.3e-79 298.5 172 82.6
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 2.7e-77 293.5 178 80.3
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.6e-72 276.9 245 59.6
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 2.6e-72 276.9 279 48.4
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 3.4e-72 276.6 244 59.4
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.7e-71 273.1 245 58.8
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 6.6e-68 262.3 242 59.1
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 2.4e-62 243.8 176 66.5
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.3e-55 221.5 292 44.2
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.7e-52 208.8 198 58.6
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.8e-44 184.5 237 46.4
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 5.3e-41 172.9 96 83.3
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 3.3e-35 153.7 88 76.1
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 6.9e-33 146.0 143 55.2
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.4e-30 138.3 73 87.7
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.2e-30 137.1 223 41.3
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 5.1e-28 129.8 375 31.5
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 9.7e-27 125.6 131 51.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 5.0e-23 113.2 67 80.6
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 3.9e-20 103.6 125 43.2
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.7e-18 97.1 69 66.7
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.5e-14 84.3 71 60.6
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 3.6e-13 80.5 63 61.9
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 8.2e-10 69.3 81 42.0
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 4.1e-09 67.0 38 76.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 3.5e-08 63.9 39 69.2
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 7.7e-08 62.8 29 100.0
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.9e-06 58.2 77 39.0


User provided reference genes

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