Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 4.4e-209 731.1 383 100.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.2e-190 669.8 383 91.4
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 3.7e-184 648.3 385 89.9
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.3e-171 606.7 394 82.5
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.7e-168 596.3 390 81.8
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 5.4e-167 591.3 387 81.1
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 9.3e-167 590.5 387 80.9
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.7e-165 586.3 362 84.5
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 3.9e-165 585.1 392 80.1
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.5e-164 582.4 387 80.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 3.1e-162 575.5 362 82.9
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 5.8e-161 571.2 362 83.4
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 2.2e-160 569.3 393 78.9
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.9e-160 568.2 384 79.2
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 7.1e-159 564.3 379 79.7
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 2.1e-158 562.8 371 80.1
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.1e-158 562.8 385 77.9
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 2.7e-158 562.4 392 76.5
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.7e-158 562.4 366 81.4
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.0e-157 560.5 379 79.2
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.3e-157 560.1 367 81.2
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 5.1e-157 558.1 380 78.7
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 6.7e-157 557.8 377 78.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 8.7e-157 557.4 366 79.8
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.7e-157 557.4 380 78.2
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 2.5e-156 555.8 397 76.1
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.3e-156 555.4 387 76.7
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 9.6e-156 553.9 383 78.6
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 9.6e-156 553.9 393 76.6
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.3e-155 553.5 377 78.8
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.6e-155 553.1 364 80.8
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.1e-155 552.7 366 79.5
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 2.1e-155 552.7 364 80.5
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 2.8e-155 552.4 366 79.8
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 2.8e-155 552.4 364 80.8
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 6.2e-155 551.2 384 78.4
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 6.2e-155 551.2 366 79.8
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 6.2e-155 551.2 369 78.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 8.1e-155 550.8 376 78.5
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 8.1e-155 550.8 377 78.8
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 8.1e-155 550.8 393 77.1
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.1e-154 550.4 384 78.1
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.1e-154 550.4 378 78.8
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 1.4e-154 550.1 377 76.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.4e-154 550.1 378 78.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.4e-154 550.1 384 77.1
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-154 549.7 377 78.5
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.8e-154 549.7 366 80.6
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 2.4e-154 549.3 389 76.6
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 3.1e-154 548.9 392 77.0
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 3.1e-154 548.9 384 78.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 5.3e-154 548.1 366 78.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.3e-154 548.1 367 78.5
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 6.9e-154 547.7 385 75.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 6.9e-154 547.7 392 75.8
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 9.0e-154 547.4 365 80.3
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 9.0e-154 547.4 365 80.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.0e-153 546.2 371 79.2
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.6e-153 545.8 379 78.6
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 4.5e-153 545.0 388 76.3
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 4.5e-153 545.0 340 82.9
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 7.6e-153 544.3 377 77.2
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 7.6e-153 544.3 375 77.1
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-152 543.1 365 79.5
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.7e-152 543.1 383 77.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.7e-152 543.1 383 76.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 2.2e-152 542.7 297 95.3
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.9e-152 542.3 384 75.5
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 4.9e-152 541.6 385 74.8
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 4.9e-152 541.6 420 71.0
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 6.5e-152 541.2 417 71.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.4e-151 540.0 403 73.9
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.9e-151 539.7 379 76.5
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.9e-151 539.7 373 78.0
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.5e-151 539.3 375 76.8
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 3.2e-151 538.9 374 77.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.2e-151 538.9 406 73.9
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.2e-151 538.9 406 73.9
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.2e-151 538.5 410 73.2
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 7.1e-151 537.7 377 76.1
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 9.3e-151 537.3 407 73.7
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.6e-150 536.6 407 73.5
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.6e-150 536.6 372 76.9
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 2.1e-150 536.2 382 75.7
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.1e-150 536.2 411 72.0
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.7e-150 535.8 378 76.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 3.5e-150 535.4 363 77.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 4.6e-150 535.0 378 75.7
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.6e-150 535.0 363 77.4
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 6.0e-150 534.6 374 77.0
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 6.0e-150 534.6 332 83.1
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 6.0e-150 534.6 332 83.1
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.0e-149 533.9 374 76.2
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.3e-149 533.5 395 73.9
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.9e-148 529.6 383 73.9
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 5.7e-148 528.1 381 74.5
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.4e-148 527.7 326 83.4
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.6e-147 526.6 391 72.9
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.6e-147 526.6 334 81.4
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 6.9e-146 521.2 381 74.3
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.0e-145 519.6 382 73.0
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.6e-145 519.2 389 73.3
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.4e-143 513.5 366 76.0
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.9e-143 513.1 297 87.2
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.9e-143 513.1 333 79.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 3.5e-142 508.8 375 72.0
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 6.1e-142 508.1 339 77.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.3e-141 506.1 326 78.8
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 8.7e-141 504.2 366 75.7
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.5e-140 503.4 297 85.9
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 3.3e-140 502.3 428 66.8
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.6e-139 500.0 297 86.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 8.2e-139 497.7 383 70.5
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 3.1e-138 495.7 361 72.6
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-137 493.8 366 73.5
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.8e-136 488.8 377 71.4
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 7.2e-135 484.6 379 68.9
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.8e-130 469.9 312 77.6
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 6.9e-130 468.0 316 79.7
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.5e-129 466.8 357 68.3
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 2.0e-129 466.5 317 77.3
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.7e-125 451.4 307 74.9
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 5.3e-122 441.8 417 60.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 9.1e-122 441.0 378 66.9
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.3e-117 426.4 272 83.1
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.3e-115 420.6 246 89.4
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.1e-114 415.6 316 69.0
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.1e-110 403.3 366 65.3
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.2e-107 393.3 285 69.8
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 9.1e-106 387.9 328 61.0
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.0e-101 372.9 334 63.5
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 4.1e-98 362.5 362 55.5
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.0e-89 333.6 198 87.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-79 301.2 198 80.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.1e-79 301.2 198 80.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.6e-73 280.8 205 71.2
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.9e-67 260.0 362 49.7
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 6.0e-65 252.3 294 46.6
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.3e-59 234.6 293 45.4
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.1e-55 221.5 324 42.6
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.3e-53 212.6 154 74.7
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.5e-52 209.5 128 80.5
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 2.3e-48 197.2 196 59.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.9e-47 194.1 178 61.2
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.8e-35 153.3 149 55.7
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.1e-34 149.1 213 44.6
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 8.2e-30 135.6 80 85.0
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.8e-29 134.4 124 61.3
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.9e-23 114.4 90 63.3
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 8.8e-16 89.0 75 62.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 8.2e-14 82.4 48 85.4
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.2e-12 78.6 64 67.2
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 2.6e-12 77.4 90 50.0
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 5.5e-10 69.7 42 71.4
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.2e-09 68.6 83 48.2
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 7.4e-07 59.3 43 67.4


User provided reference genes

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