Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 1.4e-54 216.1 113 100.0
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 3.6e-50 201.4 113 92.9
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 2.7e-45 185.3 113 86.7
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 5.9e-45 184.1 113 85.8
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 3.8e-44 181.4 113 86.7
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 4.0e-41 171.4 113 81.4
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 4.4e-40 167.9 112 80.4
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 1.3e-39 166.4 113 77.9
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 3.7e-39 164.9 113 77.9
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 6.3e-39 164.1 113 83.2
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 2.4e-38 162.2 110 79.1
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 2.0e-37 159.1 113 78.8
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 2.7e-37 158.7 113 78.8
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 3.2e-35 151.8 113 76.1
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 2.4e-30 135.6 113 67.3
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.1e-30 135.2 113 65.5
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 1.6e-29 132.9 113 64.6
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 2.7e-29 132.1 113 68.1
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 1.0e-28 130.2 113 61.9
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.0e-28 130.2 114 66.7
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 1.5e-27 126.3 113 65.5
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 1.5e-27 126.3 115 66.1
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 2.5e-27 125.6 113 62.8
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 3.3e-27 125.2 114 64.9
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.3e-27 125.2 115 66.1
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 4.3e-27 124.8 113 65.5
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 5.6e-27 124.4 113 60.2
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 9.5e-27 123.6 114 63.2
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.6e-26 122.9 113 64.6
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 3.6e-26 121.7 111 60.4
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 3.6e-26 121.7 113 60.2
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 6.1e-26 120.9 113 64.6
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 6.1e-26 120.9 113 61.1
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 1.4e-25 119.8 113 60.2
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.8e-25 119.4 113 61.9
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 3.0e-25 118.6 110 63.6
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 3.0e-25 118.6 113 60.2
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 3.0e-25 118.6 113 61.9
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 3.0e-25 118.6 110 60.9
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 3.0e-25 118.6 113 61.1
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 5.2e-25 117.9 113 62.8
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 6.8e-25 117.5 112 60.7
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 1.2e-24 116.7 116 59.5
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.5e-24 116.3 109 61.5
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 1.5e-24 116.3 113 56.6
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.5e-24 116.3 114 60.5
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 1.5e-24 116.3 115 60.0
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 1.5e-24 116.3 110 60.9
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.0e-24 115.9 108 63.0
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.0e-24 115.9 108 63.9
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 2.0e-24 115.9 114 59.6
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 2.6e-24 115.5 111 61.3
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 2.6e-24 115.5 93 68.8
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 3.4e-24 115.2 112 62.5
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 4.4e-24 114.8 111 57.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.4e-24 114.8 111 61.3
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 5.7e-24 114.4 124 56.5
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 7.5e-24 114.0 114 58.8
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 7.5e-24 114.0 113 61.9
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 7.5e-24 114.0 110 61.8
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 7.5e-24 114.0 113 60.2
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 7.5e-24 114.0 113 57.5
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 9.8e-24 113.6 110 62.7
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 9.8e-24 113.6 113 60.2
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.3e-23 113.2 108 63.0
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.3e-23 113.2 113 58.4
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 1.7e-23 112.8 108 60.2
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 2.2e-23 112.5 109 61.5
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 2.2e-23 112.5 110 56.4
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 2.9e-23 112.1 90 71.1
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 2.9e-23 112.1 83 73.5
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.9e-23 112.1 78 74.4
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.9e-23 112.1 79 74.7
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 3.7e-23 111.7 110 60.9
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 3.7e-23 111.7 113 55.8
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 4.9e-23 111.3 112 58.9
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 6.4e-23 110.9 93 65.6
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 8.3e-23 110.5 80 76.2
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 8.3e-23 110.5 109 60.6
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 8.3e-23 110.5 82 73.2
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 1.1e-22 110.2 109 64.2
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.4e-22 109.8 113 57.5
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 2.4e-22 109.0 110 58.2
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 2.4e-22 109.0 113 55.8
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 3.2e-22 108.6 112 56.2
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 3.2e-22 108.6 110 60.0
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 4.1e-22 108.2 112 53.6
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 4.1e-22 108.2 80 72.5
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 5.4e-22 107.8 75 74.7
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 5.4e-22 107.8 113 54.9
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 5.4e-22 107.8 114 54.4
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 7.0e-22 107.5 113 55.8
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 7.0e-22 107.5 113 55.8
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 7.0e-22 107.5 82 70.7
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 1.6e-21 106.3 113 54.0
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 4.6e-21 104.8 113 54.0
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 4.6e-21 104.8 113 54.9
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 5.9e-21 104.4 112 53.6
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 7.8e-21 104.0 109 56.0
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.0e-20 103.6 110 54.5
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.3e-20 103.2 113 54.0
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-20 103.2 110 54.5
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-20 103.2 110 54.5
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 1.3e-20 103.2 110 54.5
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.3e-20 103.2 108 55.6
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.3e-20 103.2 114 51.8
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 1.7e-20 102.8 110 53.6
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 1.7e-20 102.8 110 53.6
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 1.7e-20 102.8 112 52.7
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 3.0e-20 102.1 78 71.8
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 5.0e-20 101.3 110 51.8
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 5.0e-20 101.3 113 54.9
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 6.6e-20 100.9 110 51.8
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 8.6e-20 100.5 110 51.8
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 1.9e-19 99.4 115 49.6
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 1.9e-19 99.4 79 68.4
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 2.5e-19 99.0 111 54.1
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 2.5e-19 99.0 110 54.5
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 4.3e-19 98.2 110 54.5
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 5.6e-19 97.8 111 53.2
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 6.2e-18 94.4 81 60.5
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.8e-17 92.8 65 75.4
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 1.8e-17 92.8 81 59.3
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 6.8e-17 90.9 78 61.5
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 1.2e-16 90.1 78 61.5
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 2.6e-16 89.0 88 61.4
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 1.1e-14 83.6 83 56.6
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.3e-12 76.6 61 67.2
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 2.3e-12 75.9 57 77.2
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 9.5e-11 70.5 80 52.5
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 3.1e-09 65.5 53 67.9
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.2e-08 63.5 60 56.7
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 1.5e-08 63.2 44 68.2
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 9.9e-08 60.5 39 76.9


User provided reference genes

Program Settings