Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 9.8e-25 116.7 96 100.0
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 3.7e-16 88.2 96 59.4
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 8.3e-16 87.0 101 53.5
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 8.3e-16 87.0 96 55.2
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 1.9e-15 85.9 96 51.0
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 3.2e-15 85.1 97 53.6
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 5.4e-15 84.3 95 70.5
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 7.1e-15 84.0 96 50.0
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 1.2e-14 83.2 100 72.0
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 1.2e-14 83.2 100 72.0
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 2.1e-14 82.4 96 49.0
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 3.5e-14 81.6 96 57.3
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 6.0e-14 80.9 98 62.2
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 1.3e-13 79.7 96 50.0
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 2.3e-13 79.0 97 49.5
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 6.6e-13 77.4 105 67.6
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 8.6e-13 77.0 99 46.5
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.9e-12 75.9 97 46.4
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.9e-12 75.9 97 46.4
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 1.9e-12 75.9 67 64.2
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 1.9e-12 75.9 96 47.9
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 2.5e-12 75.5 96 49.0
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 5.6e-12 74.3 96 45.8
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 9.6e-12 73.6 99 47.5
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 9.6e-12 73.6 95 45.3
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 9.6e-12 73.6 94 46.8
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 9.6e-12 73.6 97 49.5
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 2.8e-11 72.0 97 61.9
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 2.8e-11 72.0 95 44.2
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 2.8e-11 72.0 95 44.2
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 3.6e-11 71.6 96 46.9
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 3.6e-11 71.6 64 65.6
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 3.6e-11 71.6 94 44.7
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 4.7e-11 71.2 100 72.0
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 6.2e-11 70.9 63 60.3
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 6.2e-11 70.9 63 60.3
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 6.2e-11 70.9 63 60.3
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 6.2e-11 70.9 96 43.8
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 1.1e-10 70.1 97 46.4
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 1.1e-10 70.1 95 47.4
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 1.8e-10 69.3 101 68.3
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.4e-10 68.9 96 45.8
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 4.0e-10 68.2 98 45.9
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 4.0e-10 68.2 101 43.6
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 4.0e-10 68.2 100 66.0
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 8.9e-10 67.0 94 42.6
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 2.0e-09 65.9 94 45.7
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 2.0e-09 65.9 63 58.7
Nn1g05379 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.0e-09 65.9 62 58.1
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 2.0e-09 65.9 99 43.4
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 3.4e-09 65.1 100 44.0
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 3.4e-09 65.1 94 40.4
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 4.4e-09 64.7 63 54.0
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 7.6e-09 63.9 101 47.5
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 7.6e-09 63.9 101 47.5
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 9.9e-09 63.5 94 45.7
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 9.9e-09 63.5 95 65.3
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 1.3e-08 63.2 63 55.6
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 1.3e-08 63.2 100 59.0
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.3e-08 63.2 63 54.0
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 1.7e-08 62.8 96 43.8
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 1.7e-08 62.8 99 62.6
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 1.7e-08 62.8 104 40.4
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 1.7e-08 62.8 104 40.4
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 1.7e-08 62.8 104 40.4
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 1.7e-08 62.8 104 40.4
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 1.7e-08 62.8 104 40.4
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 1.7e-08 62.8 104 40.4
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.7e-08 62.8 105 40.0
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 2.2e-08 62.4 66 57.6
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 2.2e-08 62.4 100 51.0
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 2.2e-08 62.4 98 40.8
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 2.9e-08 62.0 101 40.6
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 3.8e-08 61.6 63 54.0
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 3.8e-08 61.6 103 39.8
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 4.9e-08 61.2 65 55.4
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 4.9e-08 61.2 96 41.7
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 1.4e-07 59.7 97 57.7
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.4e-07 59.7 97 57.7
GSVIVG01024785001 Vitis vinifera HOM05D005811 ORTHO05D007070 1.4e-07 59.7 62 85.5
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 1.9e-07 59.3 64 51.6
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 1.9e-07 59.3 64 51.6
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.9e-07 59.3 64 51.6
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.9e-07 59.3 64 51.6
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 3.2e-07 58.5 64 50.0
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 4.2e-07 58.2 29 86.2
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 4.2e-07 58.2 97 56.7
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 4.2e-07 58.2 97 56.7
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 4.2e-07 58.2 89 71.9
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 4.2e-07 58.2 62 50.0
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 4.2e-07 58.2 65 52.3
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 5.4e-07 57.8 64 50.0
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 5.4e-07 57.8 64 50.0
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 5.4e-07 57.8 100 40.0
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 7.1e-07 57.4 62 51.6
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 7.1e-07 57.4 62 51.6
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 9.3e-07 57.0 64 50.0
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 9.3e-07 57.0 97 40.2
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 1.2e-06 56.6 64 48.4
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 1.2e-06 56.6 103 40.8
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 2.7e-06 55.5 64 48.4
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 2.7e-06 55.5 97 54.6
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.7e-06 55.5 62 51.6
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 4.6e-06 54.7 64 48.4
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 6.0e-06 54.3 92 42.4
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 7.8e-06 53.9 64 45.3
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 7.8e-06 53.9 115 37.4
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 7.8e-06 53.9 90 42.2


User provided reference genes

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