Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 8.1e-76 287.0 141 100.0
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 6.2e-60 234.2 141 80.1
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 7.6e-58 227.3 141 78.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.7e-49 199.5 142 71.1
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 6.5e-41 171.0 150 58.7
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.9e-40 169.5 150 56.7
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.9e-40 169.5 149 56.4
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.2e-40 168.3 149 55.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 7.1e-40 167.5 149 56.4
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.1e-40 167.5 150 56.0
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 7.1e-40 167.5 150 56.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.2e-39 166.8 149 57.0
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.6e-39 166.4 150 55.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.1e-39 166.0 145 57.2
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 6.0e-39 164.5 149 57.0
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 7.9e-39 164.1 147 55.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.9e-39 164.1 150 54.7
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.0e-38 163.7 150 54.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.0e-38 163.7 150 55.3
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.0e-38 163.7 150 55.3
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.0e-38 163.7 149 54.4
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.0e-38 163.7 149 56.4
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.3e-38 163.3 149 53.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.8e-38 162.9 147 55.8
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.3e-38 162.5 149 55.7
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 3.9e-38 161.8 145 55.9
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 3.9e-38 161.8 150 54.7
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.9e-38 161.8 145 56.6
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.9e-38 161.8 149 55.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.1e-38 161.4 150 54.0
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 5.1e-38 161.4 147 55.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 6.7e-38 161.0 149 55.0
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 8.7e-38 160.6 149 53.7
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.1e-37 160.2 147 55.1
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.1e-37 160.2 150 52.7
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.1e-37 160.2 150 56.0
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.9e-37 159.5 149 54.4
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.9e-37 159.5 149 53.0
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.5e-37 159.1 149 53.7
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.5e-37 159.1 147 54.4
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.5e-37 159.1 149 53.7
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.3e-37 158.7 149 52.3
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 4.3e-37 158.3 149 53.7
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 4.3e-37 158.3 149 53.7
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 4.3e-37 158.3 149 53.7
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 4.3e-37 158.3 149 53.7
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.3e-37 158.3 149 53.7
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.7e-37 157.9 147 54.4
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 5.7e-37 157.9 150 54.0
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.7e-37 157.9 144 55.6
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 7.4e-37 157.5 145 53.1
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 7.4e-37 157.5 145 53.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 9.6e-37 157.1 149 53.7
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 9.6e-37 157.1 147 54.4
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 9.6e-37 157.1 150 52.7
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-36 156.4 149 53.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.6e-36 156.4 149 53.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.6e-36 156.4 149 53.7
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.6e-36 156.4 149 53.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.6e-36 156.4 145 53.8
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.1e-36 156.0 149 52.3
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 2.1e-36 156.0 150 52.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.8e-36 155.6 149 51.7
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.7e-36 155.2 142 55.6
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 3.7e-36 155.2 149 53.7
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 3.7e-36 155.2 144 54.9
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.7e-36 155.2 144 54.9
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 4.8e-36 154.8 149 53.0
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 4.8e-36 154.8 150 51.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 6.3e-36 154.5 145 52.4
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 6.3e-36 154.5 150 52.0
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 6.3e-36 154.5 150 52.0
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 8.2e-36 154.1 142 54.9
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-35 153.3 145 53.1
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.4e-35 153.3 148 52.7
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.4e-35 153.3 140 55.7
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.8e-35 152.9 147 51.0
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.4e-35 152.5 145 52.4
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.4e-35 152.5 145 52.4
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 2.4e-35 152.5 148 50.7
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.4e-35 152.5 142 54.2
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.4e-35 152.5 143 54.5
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.1e-35 152.1 150 58.7
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.1e-35 152.1 150 51.3
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.1e-35 151.8 145 52.4
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 4.1e-35 151.8 148 54.7
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 6.9e-35 151.0 150 54.7
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 9.0e-35 150.6 149 52.3
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.2e-34 150.2 147 50.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.2e-34 150.2 150 53.3
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.2e-34 150.2 143 51.7
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.5e-34 149.8 140 53.6
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.5e-34 149.8 150 48.0
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 2.0e-34 149.4 150 48.7
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.0e-34 149.4 149 51.0
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.0e-34 149.4 144 52.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 2.0e-34 149.4 147 51.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.6e-34 149.1 144 52.1
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 4.5e-34 148.3 149 52.3
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 4.5e-34 148.3 147 51.7
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.5e-34 148.3 142 53.5
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 5.9e-34 147.9 142 52.8
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.0e-33 147.1 139 52.5
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.3e-33 146.7 150 50.0
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.2e-33 146.0 147 51.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.2e-33 146.0 149 51.7
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.9e-33 145.6 150 48.7
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.9e-33 145.6 150 48.7
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.1e-32 143.7 143 53.1
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.4e-32 143.3 138 52.2
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 5.5e-32 141.4 137 51.1
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.6e-31 139.8 147 48.3
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-31 139.4 161 52.2
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-31 138.7 161 52.2
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 7.9e-31 137.5 145 50.3
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 7.9e-31 137.5 144 47.9
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.0e-30 137.1 142 49.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 3.9e-30 135.2 143 53.1
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.1e-30 134.8 125 54.4
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.5e-29 133.3 143 46.2
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.9e-29 132.9 140 49.3
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.5e-29 132.5 148 44.6
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 3.3e-29 132.1 147 47.6
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 9.7e-29 130.6 144 47.9
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 6.3e-28 127.9 149 49.0
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.2e-23 113.6 145 44.1
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.4e-22 110.2 109 54.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 5.1e-22 108.2 120 46.7
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.5e-21 106.7 149 42.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.3e-21 105.5 124 46.8
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.4e-19 100.1 127 44.1
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.6e-18 95.9 105 49.5
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.3e-17 93.6 127 41.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.0e-13 79.7 90 48.9
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.8e-11 73.2 123 38.2
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.2e-10 70.5 67 53.7
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 5.5e-08 61.6 119 32.8
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 2.7e-07 59.3 53 54.7


User provided reference genes

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