Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 3.5e-126 454.9 222 100.0
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 7.4e-108 394.0 223 85.7
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 5.3e-106 387.9 226 85.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 7.6e-105 384.0 228 85.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.0e-104 383.6 224 84.8
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.1e-103 380.2 223 85.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 4.2e-103 378.3 225 83.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.6e-102 376.3 224 83.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 6.9e-98 360.9 226 80.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 9.4e-87 323.9 223 74.4
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-86 323.6 216 74.5
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.6e-86 323.2 231 70.1
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 4.7e-86 321.6 227 71.8
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.7e-86 321.6 231 69.7
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.0e-85 318.9 230 70.4
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.0e-85 318.9 229 70.3
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 8.8e-85 317.4 225 72.4
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-84 317.0 230 70.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.0e-84 316.2 230 69.1
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.6e-84 315.8 230 71.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 7.4e-84 314.3 229 69.0
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 9.7e-84 313.9 223 70.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.7e-83 313.2 230 69.6
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 8.2e-83 310.8 230 70.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 8.2e-83 310.8 229 68.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 8.2e-83 310.8 224 71.0
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-82 310.5 230 71.3
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-82 310.5 227 69.2
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-82 310.1 224 71.0
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.4e-82 309.3 229 70.7
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.1e-82 308.9 230 69.6
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.1e-82 308.5 224 70.5
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.3e-82 308.1 224 70.1
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.6e-81 306.6 224 70.1
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.6e-81 306.6 226 67.3
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.6e-81 305.8 225 68.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.5e-81 305.1 231 68.8
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-80 302.8 232 67.7
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.2e-80 302.8 232 67.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.2e-80 302.8 232 69.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 2.2e-80 302.8 222 70.3
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.9e-80 302.4 231 67.5
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.9e-79 299.7 234 67.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.5e-79 298.1 225 68.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.5e-79 298.1 230 67.4
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.6e-78 296.6 224 68.8
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.6e-78 295.4 224 68.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 6.1e-78 294.7 230 67.0
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.0e-77 293.9 232 68.1
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.4e-77 293.5 238 65.5
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 4.0e-77 292.0 225 65.8
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.5e-76 290.0 232 67.7
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 7.5e-76 287.7 229 65.5
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 9.7e-76 287.3 226 66.4
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 9.7e-76 287.3 219 68.9
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 9.7e-76 287.3 219 68.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.8e-75 285.8 230 64.3
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.1e-74 283.9 220 68.6
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.4e-74 283.5 226 66.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 3.5e-73 278.9 229 64.2
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 4.5e-73 278.5 224 65.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.2e-72 276.2 224 63.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.8e-72 275.4 227 66.1
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.8e-72 275.4 225 65.3
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.8e-72 275.4 225 63.1
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 6.5e-72 274.6 225 64.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.5e-72 274.2 225 64.9
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.5e-71 273.5 223 65.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.5e-71 273.5 224 63.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.9e-71 273.1 226 63.3
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 5.5e-71 271.6 237 60.8
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.2e-70 270.4 225 64.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.1e-70 269.6 230 63.9
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.7e-70 269.2 234 60.7
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.7e-70 269.2 222 62.6
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 6.1e-70 268.1 222 60.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 8.0e-70 267.7 225 63.1
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 8.0e-70 267.7 220 65.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.0e-69 267.3 225 63.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.8e-69 266.5 222 64.0
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 4.0e-69 265.4 222 61.7
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.8e-69 264.2 227 59.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.7e-68 261.5 223 60.1
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.7e-68 261.5 226 59.3
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 7.5e-68 261.2 219 62.6
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.3e-67 260.4 222 58.1
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.2e-67 259.6 227 58.6
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-67 259.2 223 59.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 3.7e-67 258.8 228 61.0
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.7e-67 258.8 224 60.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 4.8e-67 258.5 224 59.8
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.3e-67 258.1 226 59.3
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 8.3e-67 257.7 223 59.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 8.3e-67 257.7 223 58.7
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 8.3e-67 257.7 223 59.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 8.3e-67 257.7 228 60.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.4e-66 256.9 223 60.5
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.4e-66 256.1 224 57.6
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.2e-65 253.8 221 59.7
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.7e-65 252.7 223 60.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 4.5e-65 251.9 218 60.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 7.7e-65 251.1 228 58.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-64 250.8 223 59.2
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-64 250.8 223 59.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.0e-64 250.8 218 60.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.3e-64 250.4 217 59.9
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.7e-64 250.0 224 55.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.7e-64 250.0 216 59.7
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 6.5e-64 248.1 237 55.3
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.5e-63 246.9 170 71.8
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.9e-63 246.5 219 59.4
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 9.5e-63 244.2 224 57.6
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.2e-62 243.8 217 57.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.7e-62 242.7 245 53.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.7e-62 242.7 144 77.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 3.6e-62 242.3 234 56.8
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.6e-62 242.3 222 57.2
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 3.6e-62 242.3 260 54.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.0e-61 239.2 220 55.9
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.2e-60 237.3 229 56.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.5e-60 236.9 222 59.5
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.5e-60 236.9 217 59.4
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.6e-60 236.1 223 60.1
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.4e-60 235.7 225 57.8
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 5.7e-60 235.0 214 57.0
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 5.7e-60 235.0 212 57.5
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 7.5e-60 234.6 245 53.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 7.5e-60 234.6 234 54.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.2e-59 233.0 187 65.8
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.8e-59 232.6 222 56.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 6.3e-59 231.5 152 73.0
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.8e-58 229.9 233 54.1
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 7.0e-58 228.0 200 59.5
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.7e-56 223.4 190 58.9
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.9e-56 222.6 225 53.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 4.3e-55 218.8 223 56.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 9.5e-55 217.6 199 55.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 4.7e-54 215.3 214 53.3
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.7e-54 215.3 142 69.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.3e-53 213.0 146 69.9
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.0e-53 212.6 221 50.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.0e-53 212.2 201 55.2
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.8e-53 211.5 221 49.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-52 210.7 224 55.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.6e-52 209.5 160 65.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 2.9e-51 206.1 205 55.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.8e-50 203.4 227 47.6
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.8e-50 203.4 172 61.6
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 3.2e-50 202.6 215 51.2
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.2e-49 200.7 223 46.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.6e-49 200.3 221 46.6
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.0e-49 199.9 138 64.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.0e-49 199.9 236 49.6
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 5.9e-49 198.4 223 49.3
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.3e-48 196.4 219 46.6
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.9e-48 195.7 226 46.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 7.3e-47 191.4 129 64.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.6e-46 190.3 200 51.0
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.7e-46 188.7 223 47.1
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.8e-45 186.8 274 45.3
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 9.8e-44 181.0 224 46.0
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.9e-43 178.7 219 47.5
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 6.4e-43 178.3 122 67.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-41 173.7 138 63.0
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.0e-41 173.3 160 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.7e-41 172.9 173 52.0
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.3e-40 169.9 129 61.2
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.1e-38 163.3 213 47.4
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 3.1e-37 159.5 129 55.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 5.2e-37 158.7 106 66.0
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 7.5e-36 154.8 227 44.9
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 7.5e-36 154.8 227 44.9
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.7e-35 152.5 223 43.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 4.9e-35 152.1 82 85.4
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.5e-33 146.0 88 78.4
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 7.3e-23 111.7 63 81.0
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.8e-20 102.1 111 49.5
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.4e-18 97.4 54 79.6
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.7e-16 90.5 52 78.8
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.5e-07 60.1 134 37.3


User provided reference genes

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