Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1442.9 726 100.0
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1315.4 721 92.1
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 1310.4 721 91.5
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1262.7 721 87.4
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1261.9 721 87.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 1259.2 721 87.2
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1245.7 721 86.5
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 1239.2 721 87.5
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1228.0 721 84.6
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1223.8 713 85.3
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1223.4 721 85.0
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1219.1 642 95.3
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1212.6 721 86.4
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1179.1 803 75.7
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 1131.3 667 85.3
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1109.4 721 76.1
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1099.0 721 76.1
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1098.6 713 77.1
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1096.6 724 75.1
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 1093.6 724 74.3
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1090.1 723 74.7
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1089.7 721 75.3
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 1087.0 722 74.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1084.7 721 75.0
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 1084.3 723 74.4
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1082.0 723 74.3
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1080.9 723 74.3
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1080.9 723 74.3
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1077.0 713 75.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 5.0e-312 1073.5 713 73.6
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 9.9e-312 1073.2 713 74.5
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 9.9e-312 1072.8 723 73.7
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 6.0e-311 1070.5 721 73.2
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 9.9e-311 1069.7 715 74.4
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 2.2e-310 1068.5 713 73.8
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 8.3e-310 1066.6 722 73.7
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 1.9e-309 1065.4 721 73.1
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 1.3e-307 1059.3 730 71.8
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 5.1e-307 1057.4 721 72.8
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 5.6e-306 1053.9 721 72.8
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 7.6e-303 1043.5 721 72.8
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 9.9e-303 1043.1 713 72.1
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 1.6e-300 1035.8 772 68.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 2.1e-300 1035.4 713 72.2
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 1.5e-298 1029.2 713 71.5
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 3.3e-298 1028.1 713 71.0
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 7.3e-298 1026.9 721 71.0
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 1.3e-297 1026.2 721 70.2
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 1.6e-297 1025.8 721 70.2
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 4.8e-297 1024.2 667 76.0
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 3.1e-296 1021.5 722 70.2
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 2.0e-295 1018.8 713 70.8
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 2.6e-295 1018.5 721 70.5
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 4.5e-295 1017.7 692 74.3
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 1.7e-294 1015.8 721 69.9
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 1.7e-294 1015.8 713 70.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 1.3e-291 1006.1 723 69.0
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 1.3e-291 1006.1 713 70.3
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 1.8e-291 1005.7 721 69.8
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 2.3e-291 1005.4 713 70.5
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 3.9e-291 1004.6 723 68.7
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 5.1e-291 1004.2 713 69.4
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 5.1e-291 1004.2 713 69.6
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 5.1e-291 1004.2 721 68.7
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 8.7e-291 1003.4 721 68.7
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 1.5e-290 1002.7 721 68.4
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 2.5e-290 1001.9 713 70.4
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 7.4e-290 1000.3 723 68.5
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 9.6e-290 1000.0 741 70.2
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 3.7e-289 998.0 713 69.0
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 3.7e-289 998.0 723 68.7
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 4.8e-289 997.7 713 70.0
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 6.2e-289 997.3 723 68.2
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 8.1e-289 996.9 721 68.4
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 8.1e-289 996.9 713 69.0
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 1.4e-288 996.1 723 68.5
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 1.4e-288 996.1 723 68.3
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 4.0e-288 994.6 723 68.0
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 1.5e-287 992.6 723 68.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 4.5e-287 991.1 713 67.9
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 7.1e-285 983.8 728 67.4
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 9.3e-285 983.4 714 66.9
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 2.1e-284 982.2 723 67.4
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 7.9e-284 980.3 713 68.9
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 1.3e-283 979.5 717 68.1
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 2.3e-283 978.8 742 66.6
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 9.6e-282 973.4 765 64.4
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 9.3e-277 956.8 721 67.7
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 2.3e-275 952.2 743 66.2
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 1.9e-274 949.1 713 67.5
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 7.4e-274 947.2 713 66.1
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 8.2e-273 943.7 723 65.3
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 5.3e-272 941.0 721 67.0
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 5.0e-270 934.5 704 66.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 9.4e-269 930.2 728 64.0
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 1.8e-267 926.0 723 66.0
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 1.5e-263 912.9 842 57.7
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 1.1e-261 906.7 721 61.4
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 5.9e-255 884.4 579 76.7
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.2e-241 839.3 695 60.3
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 2.2e-241 839.3 721 58.9
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 9.5e-221 770.8 545 71.9
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.9e-213 746.5 520 73.1
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 2.5e-197 693.0 715 56.2
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.4e-195 687.2 460 77.6
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 2.6e-170 603.2 713 46.6
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.1e-168 597.8 723 43.3
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 4.3e-165 585.9 748 44.1
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 2.1e-164 583.6 734 43.7
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 6.3e-148 528.9 739 40.2
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.7e-145 520.8 760 39.6
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 6.7e-142 508.8 728 40.7
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 4.5e-138 496.1 741 39.3
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 4.7e-127 459.5 710 37.6
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.7e-125 452.6 737 37.0
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 6.3e-116 422.5 411 58.6
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 5.0e-113 412.9 345 63.8
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 4.0e-110 403.3 577 47.0
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.8e-102 377.9 248 81.0
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 6.8e-94 349.4 301 57.5
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 4.1e-91 340.1 220 67.7
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 5.6e-88 329.7 218 76.1
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.4e-78 298.5 295 58.3
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.2e-68 264.6 229 53.7
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 8.7e-65 252.7 205 69.3
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.5e-61 241.9 167 64.7
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.1e-51 209.1 731 25.0
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 8.5e-44 183.0 128 76.6
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.2e-43 181.0 175 55.4
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.3e-28 132.5 653 23.3
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.8e-25 122.1 651 23.2
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 7.4e-24 116.7 74 82.4
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 5.3e-22 110.5 65 89.2
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 4.5e-21 107.5 689 21.0
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 3.2e-11 74.7 58 69.0


User provided reference genes

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