Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.5e-228 794.7 415 100.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.2e-204 716.5 413 90.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.2e-199 699.9 416 89.2
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 6.5e-198 694.1 415 87.7
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.9e-194 682.6 415 86.3
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 7.4e-194 680.6 413 86.4
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.2e-190 669.1 415 86.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 5.5e-189 664.5 415 84.8
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 3.5e-188 661.8 416 83.7
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.4e-184 649.8 432 80.3
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.5e-183 646.4 415 81.9
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.3e-182 643.3 418 80.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 3.8e-182 641.7 414 81.2
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.2e-180 636.7 419 80.9
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.1e-180 636.0 416 80.8
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 2.7e-180 635.6 419 80.2
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.9e-180 634.0 419 81.1
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.0e-179 632.1 419 78.8
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.0e-179 632.1 419 79.5
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 5.1e-179 631.3 417 80.3
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 6.7e-179 630.9 420 79.0
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 8.8e-179 630.6 417 78.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.5e-178 629.0 416 79.1
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.5e-178 629.0 417 79.1
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.3e-178 628.6 417 80.1
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.4e-178 627.5 417 78.9
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 2.8e-177 625.5 413 79.2
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.8e-177 625.5 419 78.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.8e-177 624.8 413 78.9
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 4.8e-177 624.8 418 79.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.8e-176 622.9 356 91.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.1e-176 621.7 417 79.4
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.6e-175 619.0 413 78.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 5.9e-175 617.8 422 78.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 5.9e-175 617.8 425 78.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 5.9e-175 617.8 419 77.3
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.0e-174 617.1 415 77.6
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 6.5e-174 614.4 417 76.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.5e-174 614.0 417 76.7
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.1e-173 613.6 419 79.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 4.2e-173 611.7 417 76.7
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 4.2e-173 611.7 415 77.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 7.2e-173 610.9 418 76.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.2e-172 610.1 431 76.3
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-172 609.8 417 76.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.7e-172 609.0 435 75.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 7.9e-172 607.4 417 77.7
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.0e-171 607.1 417 77.9
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 2.3e-171 605.9 417 76.7
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 3.0e-171 605.5 418 76.1
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.9e-171 605.1 415 76.1
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 3.9e-171 605.1 413 77.0
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 5.1e-171 604.7 415 75.4
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.1e-171 604.7 424 76.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.7e-171 604.4 423 77.3
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 8.8e-171 604.0 417 76.3
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 8.8e-171 604.0 416 76.9
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.6e-170 602.4 418 75.1
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 9.7e-170 600.5 416 76.7
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 9.7e-170 600.5 416 77.4
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 9.7e-170 600.5 413 76.0
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.7e-169 599.7 415 76.6
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.7e-169 599.7 425 75.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.2e-169 599.4 417 76.5
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.4e-168 596.7 418 74.9
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.4e-168 596.7 456 73.2
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.8e-168 596.3 415 75.9
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.4e-168 595.9 415 75.7
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.4e-168 595.9 415 75.7
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.1e-168 595.1 428 74.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.2e-167 593.6 415 75.7
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.0e-167 592.8 428 74.5
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 2.0e-167 592.8 420 74.8
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.6e-167 592.4 412 76.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.3e-166 590.1 415 76.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-166 590.1 416 74.8
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.9e-166 589.0 416 74.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.8e-166 588.6 417 75.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.8e-166 588.6 416 74.3
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 5.0e-166 588.2 419 75.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 6.5e-166 587.8 415 74.7
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 6.5e-166 587.8 420 74.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.5e-165 586.6 448 71.4
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.9e-165 586.3 432 72.9
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.2e-165 585.5 423 73.5
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.2e-165 585.5 448 71.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 7.2e-165 584.3 417 74.3
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.1e-164 581.3 415 74.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 5.2e-163 578.2 417 73.9
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-162 577.0 429 70.9
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 5.7e-162 574.7 424 72.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.7e-161 573.2 419 73.3
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 9.1e-160 567.4 417 73.6
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 5.9e-159 564.7 422 72.5
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 7.7e-159 564.3 418 72.7
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.9e-158 562.4 347 83.3
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.5e-157 560.1 367 80.7
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.9e-157 559.7 416 72.1
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.2e-157 558.5 416 72.1
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.7e-156 555.8 396 73.7
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.4e-152 542.7 421 69.8
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.0e-150 537.3 344 80.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.0e-150 537.3 344 80.2
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.0e-147 525.4 418 69.1
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 5.7e-146 521.5 483 62.7
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 5.7e-146 521.5 483 62.7
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 3.8e-142 508.8 343 77.3
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.0e-142 508.4 322 79.8
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 5.6e-141 505.0 422 66.6
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.0e-134 484.2 417 64.7
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.3e-133 479.2 363 71.1
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.0e-132 474.6 419 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.5e-125 453.8 424 56.8
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 8.1e-116 421.4 430 59.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 8.4e-113 411.4 385 57.4
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.0e-111 405.2 409 58.4
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.1e-109 401.0 278 75.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.6e-100 369.4 336 61.9
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.5e-98 364.0 325 64.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.1e-93 347.8 365 57.8
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.6e-87 325.9 417 45.6
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 6.7e-86 322.0 319 55.5
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.8e-81 306.2 255 64.3
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 8.2e-76 288.5 422 41.5
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 4.3e-69 266.2 470 37.4
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.3e-69 266.2 467 39.0
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-59 235.0 332 43.1
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.9e-58 229.2 126 85.7
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.8e-57 226.5 131 84.7
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.9e-54 216.5 322 42.2
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.0e-46 191.8 349 36.1
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.2e-46 189.5 103 86.4
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.5e-45 188.0 103 85.4
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.0e-45 187.6 342 35.1
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.9e-40 171.0 106 78.3
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.4e-37 160.2 136 63.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 8.3e-36 155.6 95 81.1
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.9e-28 129.8 142 56.3
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.5e-26 123.6 140 52.1
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.0e-23 112.5 58 82.8
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.4e-22 111.7 65 86.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.2e-21 108.6 131 52.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.0e-21 107.8 59 96.6
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.0e-18 97.8 69 71.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.6e-16 89.7 108 50.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.4e-14 85.1 65 67.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.2e-13 82.0 96 55.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 4.4e-13 80.1 97 44.3
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.3e-09 68.6 56 62.5
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.3e-09 67.8 48 66.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.0e-09 67.4 40 82.5
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 8.6e-09 65.9 64 56.2
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 83.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.5e-08 64.3 40 77.5
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.2e-07 62.0 51 64.7
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-07 60.5 42 66.7
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 6.2e-07 59.7 36 83.3
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 6.2e-07 59.7 34 82.4
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 6.2e-07 59.7 120 29.2
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-07 59.3 120 29.2
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-07 59.3 120 29.2
arahy.Tifrunner.gnm1.ann1.MF977T Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 58.9 54 59.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-06 58.9 120 29.2
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 1.1e-06 58.9 120 29.2
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 120 29.2
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 5.2e-06 56.6 58 56.9


User provided reference genes

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