Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 4.4e-305 1050.4 515 100.0
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.3e-243 846.3 517 82.4
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 7.2e-239 830.5 519 80.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.2e-230 803.1 519 77.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.5e-217 758.1 518 74.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.1e-215 753.4 522 73.0
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.9e-215 752.7 523 72.1
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.0e-212 742.7 528 71.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 7.5e-212 740.7 520 71.5
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.8e-210 736.1 518 73.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.6e-209 733.0 549 69.0
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.7e-206 722.2 518 70.3
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 6.8e-205 717.6 519 69.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.5e-204 716.5 515 69.5
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 4.4e-204 714.9 519 69.9
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.7e-203 713.0 518 69.5
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.1e-202 710.3 522 69.9
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.8e-202 709.5 520 68.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 9.1e-202 707.2 394 87.8
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-201 706.4 523 68.3
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.3e-200 703.4 519 68.6
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.7e-200 703.0 519 68.6
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.0e-200 701.4 519 68.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.0e-200 701.4 522 68.0
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.1e-199 700.3 534 66.5
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.2e-198 696.8 516 68.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.2e-197 691.4 514 66.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.7e-196 688.0 531 66.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 3.7e-195 685.3 514 66.5
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.9e-195 684.9 522 65.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.2e-193 680.2 524 65.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.5e-193 678.7 531 65.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.5e-193 678.7 525 65.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 5.9e-193 677.9 522 66.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 7.8e-193 677.6 522 65.3
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.3e-192 676.8 525 65.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.3e-192 676.8 521 64.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-192 674.9 519 65.7
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-192 674.9 519 65.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.3e-191 672.2 524 66.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-190 670.2 524 65.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.6e-190 668.7 535 63.7
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 4.7e-190 668.3 520 64.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.1e-190 667.9 519 65.1
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.1e-190 667.9 519 65.1
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.4e-189 666.8 526 64.6
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.8e-189 666.4 520 64.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 6.8e-189 664.5 535 63.0
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.2e-188 663.7 523 65.0
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.0e-188 662.9 523 63.9
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.0e-188 662.9 523 63.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.4e-188 661.8 514 64.4
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 9.8e-188 660.6 530 62.8
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.3e-187 660.2 532 62.4
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.7e-187 658.7 527 63.6
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.3e-187 657.5 524 64.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-186 657.1 516 64.1
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.1e-186 657.1 520 63.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.1e-186 655.2 517 63.6
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-185 653.7 530 64.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.7e-185 652.5 528 63.4
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.0e-184 650.6 534 62.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.3e-184 650.2 532 62.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.3e-184 650.2 516 64.1
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 5.0e-184 648.3 526 63.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 6.6e-184 647.9 522 63.2
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.5e-183 646.7 521 63.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.9e-183 646.4 460 68.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.6e-183 644.8 529 62.9
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.8e-182 642.5 553 60.6
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.8e-182 642.5 553 60.6
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 2.3e-181 639.4 520 62.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.1e-181 639.0 514 63.8
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 5.2e-181 638.3 522 62.6
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 8.9e-181 637.5 538 60.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.5e-180 634.4 536 61.8
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 6.0e-177 624.8 533 60.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-176 623.6 523 62.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 5.1e-176 621.7 540 58.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 6.6e-176 621.3 530 60.4
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.1e-175 620.5 529 59.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.5e-175 620.2 543 58.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.5e-175 620.2 551 57.7
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.3e-175 619.0 498 62.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.3e-175 618.6 519 61.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 5.6e-175 618.2 533 58.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 9.5e-175 617.5 533 58.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.6e-174 616.7 548 58.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.1e-174 616.3 541 58.0
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-174 615.9 538 58.0
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.5e-172 610.1 554 57.4
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.6e-172 609.4 531 60.1
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.4e-172 608.6 531 59.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 7.5e-172 607.8 476 62.6
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.7e-171 606.7 527 58.6
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 6.4e-171 604.7 456 65.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.1e-170 604.0 531 57.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.4e-170 602.8 519 58.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 9.2e-170 600.9 521 59.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.5e-169 599.0 521 58.7
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 4.6e-169 598.6 517 59.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 6.6e-168 594.7 463 63.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.5e-167 593.6 526 58.4
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 7.3e-167 591.3 522 60.9
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 9.5e-167 590.9 525 58.3
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 5.2e-165 585.1 449 64.1
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 8.9e-165 584.3 531 57.3
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 5.6e-159 565.1 437 64.1
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.1e-153 546.6 480 59.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.3e-150 537.3 444 62.2
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.9e-149 531.6 379 67.3
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.7e-145 519.6 311 79.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.3e-144 517.3 466 57.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.0e-140 503.4 290 81.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-137 494.2 427 58.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 3.9e-136 489.2 303 76.9
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.3e-135 486.1 311 72.7
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.1e-127 461.1 311 68.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.4e-119 431.8 379 58.3
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-117 427.9 296 68.2
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.1e-117 426.0 472 45.8
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 7.7e-116 421.8 517 44.3
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.5e-108 396.4 589 38.5
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.6e-105 386.3 238 78.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.0e-104 384.8 246 76.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.2e-99 367.1 239 75.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 5.7e-87 325.9 534 40.6
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 5.9e-84 315.8 196 79.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.7e-81 306.2 328 50.0
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.0e-80 305.1 200 73.0
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.6e-79 300.4 226 64.2
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-77 295.0 339 47.2
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 5.6e-66 256.1 166 74.7
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 4.0e-64 250.0 270 51.5
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.2e-54 217.6 220 53.2
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-53 215.3 220 52.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-50 204.1 223 53.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 5.6e-50 203.0 179 54.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-49 201.1 426 29.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-47 195.3 155 61.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-47 195.3 155 61.3
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 9.9e-47 192.2 157 62.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 4.9e-46 189.9 124 70.2
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.6e-43 179.5 109 78.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 7.9e-36 156.0 166 51.2
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 3.0e-35 154.1 159 53.5
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.5e-34 151.8 304 33.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.5e-34 151.0 106 64.2
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 4.3e-34 150.2 271 39.9
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 4.8e-33 146.7 163 49.1
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-32 145.2 267 37.8
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.8e-32 144.8 173 49.1
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.5e-31 141.7 95 72.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.7e-28 131.0 90 63.3
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.7e-28 131.0 90 63.3
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.1e-26 125.6 98 63.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.8e-23 113.2 174 39.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-22 111.3 85 61.2
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.3e-19 101.3 100 56.0
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.8e-17 93.6 72 65.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 9.3e-13 79.3 59 64.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-09 68.9 88 44.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.4e-08 65.5 35 91.4
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 1.2e-07 62.4 160 35.0


User provided reference genes

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