Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 4.3e-116 421.4 223 100.0
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 2.8e-115 418.7 223 99.1
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 2.4e-90 335.9 224 80.8
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 3.2e-87 325.5 226 79.2
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 7.2e-87 324.3 224 79.5
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 2.1e-86 322.8 222 79.3
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 8.8e-85 317.4 225 79.1
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 1.0e-77 293.9 225 74.7
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 3.8e-72 275.4 226 69.5
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 6.6e-72 274.6 226 66.8
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 1.6e-70 270.0 208 72.6
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 3.0e-69 265.8 238 66.0
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 5.2e-69 265.0 225 65.8
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 1.2e-68 263.8 224 63.8
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 2.0e-68 263.1 241 63.5
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 4.9e-67 258.5 243 60.5
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 1.4e-66 256.9 225 61.8
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 1.8e-66 256.5 233 60.5
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.4e-66 256.1 229 64.2
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 4.1e-66 255.4 245 61.6
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 5.4e-66 255.0 233 63.9
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 1.2e-65 253.8 227 62.6
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 2.0e-65 253.1 241 60.2
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 2.7e-65 252.7 248 59.3
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 2.7e-65 252.7 241 60.6
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 4.6e-65 251.9 248 59.3
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 7.8e-65 251.1 227 63.0
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 7.8e-65 251.1 224 62.5
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 3.9e-64 248.8 241 60.2
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 1.9e-63 246.5 227 60.8
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 2.5e-63 246.1 248 58.1
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 2.5e-63 246.1 227 60.4
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 3.3e-63 245.7 226 61.1
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 4.3e-63 245.4 229 61.1
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 7.3e-63 244.6 226 60.6
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 7.3e-63 244.6 226 60.6
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 3.6e-62 242.3 226 60.2
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 3.6e-62 242.3 255 58.8
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 4.7e-62 241.9 253 58.1
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 8.0e-62 241.1 245 58.0
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 3.1e-61 239.2 227 59.5
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 8.9e-61 237.7 226 61.1
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 2.0e-60 236.5 228 57.0
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 2.6e-60 236.1 223 62.3
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 3.4e-60 235.7 230 59.6
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 9.8e-60 234.2 238 58.8
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 1.3e-59 233.8 249 56.6
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.3e-59 233.8 224 60.3
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.3e-59 233.8 237 57.4
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 2.2e-59 233.0 198 69.2
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 2.9e-59 232.6 224 58.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 8.3e-59 231.1 244 54.1
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 7.0e-58 228.0 221 60.2
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 9.2e-58 227.6 228 54.4
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.2e-57 227.3 228 54.4
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 2.7e-57 226.1 235 56.6
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 2.7e-57 226.1 230 56.5
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 6.0e-57 224.9 247 55.9
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 1.0e-56 224.2 192 69.8
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 1.0e-56 224.2 244 53.3
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 2.3e-56 223.0 228 54.4
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 3.9e-56 222.2 234 56.4
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 8.6e-56 221.1 253 53.4
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 2.5e-55 219.5 237 55.3
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 4.3e-55 218.8 232 55.2
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 1.2e-54 217.2 237 55.3
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 2.1e-54 216.5 224 55.8
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 3.6e-54 215.7 245 54.7
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 4.7e-54 215.3 159 74.2
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 8.1e-54 214.5 294 46.6
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-53 214.2 159 73.6
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.4e-53 213.8 256 52.7
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.2e-53 211.8 225 54.7
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 3.4e-52 209.1 190 63.2
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 5.4e-50 201.8 202 59.4
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 1.2e-49 200.7 197 57.9
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.1e-49 199.9 217 52.5
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 6.0e-49 198.4 201 58.2
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 5.1e-48 195.3 203 59.1
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 8.1e-46 188.0 195 59.0
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 1.5e-44 183.7 223 53.4
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 2.6e-44 183.0 238 48.3
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 3.5e-41 172.6 106 88.7
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 6.0e-41 171.8 235 44.3
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 6.0e-41 171.8 235 44.3
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 6.0e-41 171.8 235 44.3
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 1.0e-40 171.0 235 44.3
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 1.3e-40 170.6 235 44.3
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.3e-40 170.6 228 45.2
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.7e-40 170.2 235 44.3
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-40 170.2 124 75.0
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 3.0e-40 169.5 165 58.2
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 3.0e-40 169.5 212 50.5
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 3.9e-40 169.1 225 45.8
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 5.1e-40 168.7 228 45.2
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 6.6e-40 168.3 103 82.5
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 8.6e-40 167.9 174 57.5
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.5e-39 167.2 102 85.3
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.5e-39 167.2 102 85.3
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 7.3e-39 164.9 283 42.4
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 9.6e-39 164.5 226 45.1
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 1.2e-38 164.1 228 44.7
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 1.6e-38 163.7 166 58.4
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 2.1e-38 163.3 118 73.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.8e-38 162.9 190 51.1
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 3.6e-38 162.5 109 79.8
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.1e-37 159.5 96 83.3
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 4.0e-37 159.1 229 42.4
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 8.9e-37 157.9 266 42.9
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 2.9e-35 152.9 260 38.8
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 1.1e-34 151.0 253 41.1
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 1.3e-30 137.5 241 40.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.8e-29 133.7 88 77.3
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 6.9e-29 131.7 226 40.7
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 7.1e-26 121.7 169 48.5
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 2.5e-23 113.2 164 46.3
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 2.1e-22 110.2 247 32.8
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.8e-22 109.8 122 51.6
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 1.1e-21 107.8 129 48.1
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.4e-21 107.5 252 32.5
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 3.4e-20 102.8 221 33.0
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.3e-19 100.9 62 82.3
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.8e-19 99.4 128 48.4
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.1e-18 97.8 66 72.7
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 3.5e-17 92.8 62 75.8
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 7.9e-17 91.7 138 46.4
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 1.0e-16 91.3 140 42.9
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.0e-16 91.3 138 43.5
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.8e-16 90.5 169 41.4
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.8e-16 90.5 50 90.0
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.9e-16 89.4 153 41.2
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.5e-15 87.4 168 38.7
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.5e-12 77.4 62 71.0
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 3.2e-10 69.7 98 44.9
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 2.5e-07 60.1 221 28.5
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 7.4e-07 58.5 52 50.0
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 9.6e-07 58.2 31 87.1


User provided reference genes

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