Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.0e-128 461.8 233 100.0
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 2.3e-104 382.5 231 81.4
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 6.8e-104 380.9 231 81.4
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 3.9e-99 365.2 231 80.1
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.1e-90 337.0 242 69.8
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 4.7e-89 331.6 231 70.6
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.3e-83 312.8 238 66.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 6.6e-83 311.2 237 66.7
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.4e-80 303.5 233 68.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 3.2e-69 265.8 235 59.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.3e-65 253.8 234 56.4
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.5e-63 246.9 192 64.6
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 4.8e-49 198.7 232 47.4
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.2e-49 198.4 232 45.7
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-48 197.6 230 47.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.8e-48 196.8 232 45.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.4e-47 192.6 233 45.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 5.8e-47 191.8 236 45.8
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 5.8e-47 191.8 232 45.3
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-46 190.7 235 46.4
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.7e-46 190.3 234 47.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 2.9e-46 189.5 219 47.5
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.8e-46 189.1 233 43.8
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.9e-46 188.7 232 43.5
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-45 187.6 232 44.0
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.4e-45 187.2 236 43.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.5e-45 186.4 231 46.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.5e-45 185.3 235 45.5
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.6e-44 183.7 235 43.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.1e-44 183.3 242 45.0
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 4.6e-44 182.2 234 43.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 4.6e-44 182.2 238 45.4
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 6.0e-44 181.8 248 44.4
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.3e-43 180.6 231 42.4
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.3e-43 180.6 231 43.7
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.3e-43 179.9 234 43.6
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.1e-42 177.6 236 44.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.5e-42 177.2 231 42.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 3.3e-42 176.0 234 43.6
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 4.3e-42 175.6 231 42.4
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.7e-42 174.5 210 47.6
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.3e-41 174.1 217 45.2
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 8.2e-41 171.4 237 41.4
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.1e-40 171.0 236 41.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.4e-40 170.6 231 39.4
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.1e-40 169.5 236 39.8
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 6.9e-40 168.3 233 42.9
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 6.9e-40 168.3 233 40.8
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 5.9e-39 165.2 199 43.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 8.5e-38 161.4 240 40.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.5e-37 159.8 245 40.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 3.2e-37 159.5 233 40.3
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.2e-37 159.5 235 40.4
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.2e-37 159.1 225 40.0
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 4.2e-37 159.1 245 42.0
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 4.2e-37 159.1 240 40.4
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 9.3e-37 157.9 185 45.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.6e-36 157.1 251 38.2
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.6e-36 157.1 239 40.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.1e-36 156.8 233 38.6
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 4.6e-36 155.6 241 39.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.1e-36 155.2 238 39.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.9e-36 154.8 244 38.9
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.3e-35 154.1 236 39.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.8e-35 153.7 233 39.9
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.3e-35 153.3 233 38.6
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.3e-35 153.3 237 38.8
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.3e-35 153.3 235 37.9
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 3.0e-35 152.9 248 37.5
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 6.7e-35 151.8 188 45.7
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.5e-34 150.6 248 37.9
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.5e-34 149.8 162 50.0
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 2.5e-34 149.8 245 38.8
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.3e-34 149.4 220 41.8
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 9.7e-34 147.9 228 37.3
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 3.7e-33 146.0 235 38.3
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 4.8e-33 145.6 231 37.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 6.3e-33 145.2 234 36.3
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.1e-32 142.9 230 36.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 6.9e-32 141.7 233 36.5
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.5e-31 140.6 226 36.7
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.6e-31 139.8 238 34.5
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 5.9e-31 138.7 233 35.6
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 5.9e-31 138.7 233 35.6
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.0e-30 137.9 256 32.4
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.0e-30 137.9 237 35.4
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.7e-30 137.1 236 35.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.7e-30 137.1 237 35.0
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 2.2e-30 136.7 230 38.3
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.6e-28 130.6 244 33.2
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 2.0e-26 123.6 233 33.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 3.3e-26 122.9 233 35.2
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.7e-25 120.6 259 30.9
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.6e-23 113.2 167 39.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.4e-23 112.8 238 33.6
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.0e-22 111.3 133 48.9
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.0e-22 111.3 231 31.6
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.5e-21 106.7 186 38.2
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.9e-19 99.4 150 44.0
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 4.8e-17 92.4 131 42.7
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.0e-14 84.7 187 29.9
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.9e-13 80.5 131 29.0
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 7.2e-13 78.6 228 29.8
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.4e-13 78.2 130 40.0
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-12 76.6 89 48.3
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-10 70.9 89 47.2
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-10 69.3 86 46.5
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.5e-10 68.6 235 29.8
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.2e-09 65.1 87 44.8
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-08 63.9 81 46.9
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-08 63.5 100 30.0
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 7.7e-07 58.5 84 38.1


User provided reference genes

Program Settings