Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.8e-37 158.7 75 100.0
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 4.8e-27 124.0 73 79.5
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 1.4e-26 122.5 73 79.5
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 1.8e-26 122.1 73 78.1
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 1.8e-26 122.1 73 74.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 7.0e-26 120.2 73 74.0
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 1.2e-25 119.4 73 74.0
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 2.0e-25 118.6 73 72.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 4.2e-23 110.9 73 69.9
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 1.2e-22 109.4 73 68.5
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 2.7e-22 108.2 73 65.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 2.7e-22 108.2 73 68.5
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 4.7e-22 107.5 73 71.2
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 8.8e-21 103.2 73 64.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.5e-20 102.4 73 64.4
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.0e-20 102.1 73 64.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.6e-20 101.7 73 60.3
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 4.4e-20 100.9 73 60.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 4.4e-20 100.9 73 60.3
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.7e-20 100.5 73 64.4
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 7.4e-20 100.1 73 64.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 7.4e-20 100.1 73 63.0
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 7.4e-20 100.1 73 58.9
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 9.7e-20 99.8 73 67.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.8e-19 98.2 73 63.0
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.8e-19 98.2 73 63.0
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 3.7e-19 97.8 73 64.4
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 3.7e-19 97.8 73 57.5
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 6.3e-19 97.1 73 58.9
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 8.2e-19 96.7 71 60.6
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 8.2e-19 96.7 73 63.0
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 8.2e-19 96.7 73 63.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 8.2e-19 96.7 73 63.0
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 1.1e-18 96.3 73 65.8
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.8e-18 95.5 71 59.2
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 2.4e-18 95.1 73 60.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 4.1e-18 94.4 74 58.1
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 9.1e-18 93.2 74 59.5
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 1.2e-17 92.8 72 55.6
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 2.6e-17 91.7 73 57.5
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 3.5e-17 91.3 71 56.3
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 4.5e-17 90.9 73 58.9
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 4.5e-17 90.9 73 61.6
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 5.9e-17 90.5 73 60.3
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 7.7e-17 90.1 73 57.5
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 7.7e-17 90.1 76 59.2
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 7.7e-17 90.1 71 56.3
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 1.0e-16 89.7 74 56.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 1.0e-16 89.7 73 56.2
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 1.0e-16 89.7 70 67.1
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 2.2e-16 88.6 72 58.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 2.2e-16 88.6 73 57.5
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 2.2e-16 88.6 73 58.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 2.2e-16 88.6 73 56.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 2.2e-16 88.6 70 65.7
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 2.9e-16 88.2 73 57.5
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 5.0e-16 87.4 63 60.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 5.0e-16 87.4 70 55.7
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 1.5e-15 85.9 73 56.2
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 1.9e-15 85.5 77 55.8
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 2.5e-15 85.1 71 54.9
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 5.5e-15 84.0 73 58.9
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 7.2e-15 83.6 73 56.2
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.1e-14 82.0 76 55.3
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 3.6e-14 81.3 72 52.8
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 1.0e-13 79.7 73 54.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 1.4e-13 79.3 73 49.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.8e-13 79.0 72 51.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 1.8e-13 79.0 70 57.1
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 5.2e-13 77.4 72 51.4
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 5.2e-13 77.4 72 51.4
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 6.8e-13 77.0 73 54.8
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 6.8e-13 77.0 72 50.0
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 6.8e-13 77.0 72 50.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 6.8e-13 77.0 72 52.8
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 6.8e-13 77.0 74 47.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.5e-12 75.9 72 50.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 1.5e-12 75.9 72 50.0
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.5e-12 75.9 72 51.4
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 2.0e-12 75.5 73 53.4
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 2.0e-12 75.5 70 52.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 3.4e-12 74.7 74 51.4
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 3.4e-12 74.7 73 50.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 3.4e-12 74.7 72 48.6
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 5.7e-12 73.9 73 46.6
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 7.5e-12 73.6 72 47.2
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 1.7e-11 72.4 72 48.6
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 1.7e-11 72.4 72 50.0
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.7e-11 72.4 70 51.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 2.2e-11 72.0 72 47.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-11 72.0 72 47.2
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-11 72.0 72 47.2
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.2e-11 72.0 72 47.2
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 2.2e-11 72.0 72 47.2
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 2.2e-11 72.0 70 51.4
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.2e-11 72.0 70 51.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 2.2e-11 72.0 73 50.7
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.7e-11 71.2 70 50.0
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.7e-11 71.2 70 50.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.4e-10 68.6 76 44.7
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 4.1e-10 67.8 72 47.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 1.2e-09 66.2 78 55.1
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.7e-09 65.1 71 46.5
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 7.7e-09 63.5 72 41.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 7.7e-09 63.5 72 41.7
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 7.7e-09 63.5 72 41.7
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.0e-08 63.2 73 50.7
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.2e-08 62.0 78 50.0
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.2e-08 62.0 76 46.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.9e-08 61.6 73 49.3
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.8e-08 61.2 73 49.3
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.8e-08 61.2 78 50.0
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 3.8e-08 61.2 78 50.0
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 8.5e-08 60.1 35 68.6
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-07 59.7 73 43.8
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-07 58.9 73 42.5
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-07 58.9 73 42.5
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-07 58.9 73 42.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.2e-07 58.2 72 41.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.0e-06 53.5 71 42.3


User provided reference genes

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