Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.4e-131 471.1 251 100.0
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.4e-118 429.9 252 91.7
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.4e-83 312.8 184 88.6
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 4.9e-76 288.5 216 73.6
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 3.7e-71 272.3 184 81.0
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 2.7e-66 256.1 216 64.8
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 6.1e-66 255.0 181 71.3
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.8e-65 253.4 217 67.7
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 3.0e-65 252.7 216 64.8
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 3.0e-65 252.7 184 75.0
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 6.3e-63 245.0 181 70.2
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.5e-61 238.8 181 72.4
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.7e-60 236.9 181 71.8
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.1e-59 234.2 219 60.3
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 5.5e-59 231.9 215 61.4
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 9.4e-59 231.1 214 62.6
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 2.7e-58 229.6 216 60.6
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.0e-57 227.6 214 62.6
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 5.7e-56 221.9 214 59.8
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 5.7e-56 221.9 216 58.8
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 5.7e-56 221.9 186 64.5
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 4.8e-55 218.8 217 56.7
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 6.3e-55 218.4 185 65.9
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.4e-54 216.5 217 56.2
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.4e-54 216.5 255 52.2
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 9.1e-54 214.5 216 58.8
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.5e-53 213.8 216 58.3
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.0e-53 213.4 184 65.2
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 2.0e-53 213.4 187 60.4
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 2.6e-53 213.0 218 57.8
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.7e-52 210.3 184 59.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.9e-52 209.5 257 54.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 8.5e-52 208.0 184 58.7
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.1e-51 207.6 218 58.7
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.4e-51 207.2 217 56.2
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 3.2e-51 206.1 216 53.7
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 4.2e-51 205.7 216 53.2
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 9.4e-51 204.5 217 54.4
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.6e-50 202.6 225 56.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 7.9e-50 201.4 184 59.8
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.4e-49 200.7 220 56.8
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.4e-49 200.7 217 55.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.8e-49 200.3 185 58.9
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.8e-49 200.3 184 55.4
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.0e-49 199.5 190 58.9
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 3.9e-49 199.1 214 49.5
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 3.9e-49 199.1 216 54.2
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 3.9e-49 199.1 191 58.1
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 5.1e-49 198.7 184 58.7
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 6.7e-49 198.4 223 53.4
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 8.8e-49 198.0 188 62.8
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 8.8e-49 198.0 188 62.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.1e-48 197.6 185 61.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.5e-48 197.2 185 57.3
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 1.5e-48 197.2 218 53.2
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.5e-48 197.2 264 48.5
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 2.0e-48 196.8 217 51.6
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.6e-48 196.4 185 59.5
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 4.4e-48 195.7 185 60.0
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 5.7e-48 195.3 191 60.7
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 5.7e-48 195.3 216 54.2
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 7.4e-48 194.9 187 61.0
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 7.4e-48 194.9 187 57.8
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 9.7e-48 194.5 184 56.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.7e-47 193.7 186 54.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 1.7e-47 193.7 258 47.3
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 2.2e-47 193.4 185 56.2
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.8e-47 193.0 142 67.6
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 2.8e-47 193.0 216 55.6
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 2.8e-47 193.0 216 55.6
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.8e-47 193.0 188 58.0
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.8e-47 193.0 257 46.7
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 4.8e-47 192.2 217 52.5
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 6.3e-47 191.8 217 52.5
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 6.3e-47 191.8 220 50.9
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 8.2e-47 191.4 257 49.0
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.8e-46 190.3 190 61.1
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.4e-46 189.9 196 59.2
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.4e-46 189.9 216 49.5
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 2.4e-46 189.9 185 55.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 2.4e-46 189.9 182 55.5
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 4.1e-46 189.1 188 55.3
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 9.1e-46 188.0 220 52.3
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 9.1e-46 188.0 220 52.3
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.6e-45 187.2 191 55.0
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 2.0e-45 186.8 197 58.4
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 2.6e-45 186.4 217 52.5
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.5e-45 185.7 220 52.3
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 5.9e-45 185.3 186 58.1
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.7e-45 184.9 219 54.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 7.7e-45 184.9 188 56.9
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 7.7e-45 184.9 222 54.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.0e-44 184.5 217 54.4
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.3e-44 184.1 218 50.5
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.7e-44 183.7 184 53.3
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.7e-44 183.7 220 51.8
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.5e-43 180.6 216 55.1
Ca_12098_v3 Cicer arietinum L. HOM05D018217 ORTHO05D006483 1.9e-43 180.3 102 93.1
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 5.5e-43 178.7 183 57.9
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 7.2e-43 178.3 192 54.2
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.2e-42 177.6 188 52.1
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 2.7e-42 176.4 125 68.0
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 6.1e-42 175.3 192 53.6
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.3e-41 173.3 189 53.4
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 4.0e-41 172.6 190 51.1
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 4.0e-41 172.6 190 51.1
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 4.0e-41 172.6 190 53.2
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.2e-41 172.2 217 48.4
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.4e-38 163.3 127 66.9
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 5.3e-38 162.2 222 45.9
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 9.4e-35 151.4 160 52.5
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.2e-32 144.4 153 60.1
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 7.5e-32 141.7 157 51.0
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 9.4e-27 124.8 122 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.6e-26 124.0 187 42.8
Ca_03537_v3 Cicer arietinum L. HOM05D018217 ORTHO05D149247 9.8e-24 114.8 68 88.2
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.2e-15 87.0 95 53.7
Ca_21513_v3 Cicer arietinum L. HOM05D018217 ORTHO05D148900 3.7e-15 86.3 49 93.9
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.7e-13 80.1 85 52.9
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 3.5e-13 79.7 45 86.7
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.8e-09 67.4 130 37.7
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 5.2e-09 65.9 70 54.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 9.8e-08 61.6 70 51.4
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 1.9e-06 57.4 60 51.7
Ca_09318_v3 Cicer arietinum L. HOM05D018217 ORTHO05D149474 7.0e-06 55.5 44 75.0
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 9.2e-06 55.1 100 42.0


User provided reference genes

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