Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.1e-170 601.7 298 100.0
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.0e-149 533.5 299 89.6
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 4.4e-148 528.1 300 88.3
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.2e-147 525.8 299 87.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.2e-140 503.4 301 85.7
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 6.8e-133 477.6 299 80.6
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 4.1e-130 468.4 299 79.3
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.7e-128 463.0 298 79.5
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 2.1e-126 456.1 297 77.1
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.8e-126 455.7 297 76.8
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.8e-125 453.0 301 76.7
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 2.3e-125 452.6 299 77.6
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 4.6e-121 438.3 298 75.5
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.1e-117 425.6 296 73.3
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 4.4e-116 421.8 296 72.6
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.3e-115 420.2 296 70.9
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.2e-115 419.5 296 70.3
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.1e-114 417.2 296 71.6
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.9e-114 416.4 296 70.9
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.4e-114 414.8 296 72.3
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 7.1e-114 414.5 296 71.3
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 7.1e-114 414.5 297 72.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 9.3e-114 414.1 303 69.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.2e-113 413.7 296 71.3
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.2e-113 413.7 296 71.3
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.2e-113 413.7 300 69.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.6e-113 413.3 298 71.8
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.6e-113 411.8 296 70.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 6.0e-113 411.4 296 69.6
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 3.0e-112 409.1 296 70.3
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.9e-112 408.7 296 68.9
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-111 407.1 298 68.1
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.5e-111 406.0 304 70.1
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.3e-111 405.6 301 69.1
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 3.3e-111 405.6 296 67.6
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 4.3e-111 405.2 296 69.9
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 7.3e-111 404.4 296 69.9
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 7.3e-111 404.4 296 70.3
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 9.6e-111 404.1 299 69.6
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-110 403.7 297 70.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.6e-110 402.1 286 71.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.4e-109 400.2 297 70.0
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.8e-109 399.8 297 69.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.8e-109 399.8 301 68.1
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.4e-109 399.4 301 68.1
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.1e-109 399.1 297 69.7
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 3.1e-109 399.1 301 68.1
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 4.0e-109 398.7 288 68.4
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 9.0e-109 397.5 298 69.5
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.0e-108 396.4 296 67.6
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.0e-108 396.4 296 67.9
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 2.0e-108 396.4 297 67.0
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 3.4e-108 395.6 296 68.9
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 3.4e-108 395.6 320 65.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.4e-108 395.6 233 80.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 7.6e-108 394.4 296 67.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 7.6e-108 394.4 297 67.0
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.7e-107 393.3 298 66.4
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.7e-107 393.3 299 67.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.7e-107 393.3 301 67.4
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.8e-107 392.1 288 69.1
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 4.9e-107 391.7 296 66.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 4.9e-107 391.7 296 67.2
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 4.9e-107 391.7 298 66.4
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.4e-107 391.3 297 68.4
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 6.4e-107 391.3 303 67.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.1e-106 390.6 296 66.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.1e-106 390.6 299 67.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.4e-106 390.2 296 67.2
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.9e-106 389.8 296 67.6
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 2.4e-106 389.4 303 66.7
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 4.2e-106 388.7 243 77.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.4e-106 388.3 296 67.9
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.4e-106 388.3 299 67.2
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 5.4e-106 388.3 247 75.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.1e-106 387.9 296 67.2
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 7.1e-106 387.9 249 76.3
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 9.3e-106 387.5 256 72.7
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.3e-106 387.5 296 67.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.2e-105 387.1 296 66.6
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.2e-105 387.1 239 78.2
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.6e-105 386.7 296 66.2
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.6e-105 386.7 296 66.2
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.6e-105 386.7 296 66.2
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 4.6e-105 385.2 240 77.9
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.0e-104 384.0 299 66.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.0e-104 382.5 313 64.2
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 3.0e-104 382.5 243 77.4
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 3.9e-104 382.1 333 62.8
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.6e-104 381.3 288 66.0
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.9e-103 379.8 281 67.3
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.3e-103 378.6 366 56.0
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 9.6e-103 377.5 253 72.7
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-102 377.1 285 68.1
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 3.6e-102 375.6 316 62.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 6.9e-101 371.3 224 79.5
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.6e-100 369.4 334 60.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.3e-99 367.1 223 78.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.2e-97 360.5 219 79.0
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-97 359.8 299 63.9
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 6.0e-97 358.2 272 69.1
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.0e-96 357.5 256 69.9
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.9e-96 355.5 286 64.7
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 6.7e-96 354.8 255 69.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.9e-95 353.2 287 63.8
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 3.3e-95 352.4 294 63.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.8e-94 349.4 223 74.9
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 9.0e-93 344.4 246 67.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.5e-92 343.6 201 83.1
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 5.8e-92 341.7 299 58.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.7e-91 340.1 296 61.5
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.1e-90 337.4 296 62.2
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 7.9e-89 331.3 258 65.9
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.1e-85 320.9 213 75.1
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.8e-85 320.1 223 69.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.4e-85 319.7 210 75.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.4e-84 315.8 251 62.2
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.9e-83 312.8 219 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.2e-81 307.4 233 66.1
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.6e-81 307.0 205 73.2
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 5.1e-80 302.0 188 76.6
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.5e-79 300.4 248 63.3
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 4.3e-79 298.9 219 64.8
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.6e-73 279.3 281 50.5
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 6.1e-65 251.9 216 56.0
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.4e-64 250.8 252 52.8
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.8e-62 242.3 428 38.8
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.4e-61 240.7 289 48.8
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.3e-59 234.2 214 52.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.3e-59 234.2 214 52.3
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 5.0e-59 232.3 140 80.0
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.9e-58 230.3 140 78.6
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.7e-54 217.2 132 78.8
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 7.2e-50 201.8 189 56.6
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.1e-49 200.3 250 42.4
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.0e-48 196.4 234 43.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.8e-48 195.3 234 43.2
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 5.0e-43 179.1 138 65.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.3e-40 170.2 170 55.9
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.2e-40 169.1 110 74.5
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 6.8e-40 168.7 163 58.3
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.2e-38 163.7 97 83.5
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.5e-36 156.0 97 81.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 4.3e-34 149.4 109 61.5
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 3.0e-32 143.3 145 53.8
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 3.3e-26 123.2 101 64.4
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 4.3e-26 122.9 92 68.5
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.3e-22 111.3 160 46.9
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 9.2e-21 105.1 67 74.6
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 6.0e-20 102.4 160 45.0
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 2.6e-15 87.0 82 54.9
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 7.6e-07 58.9 176 31.8


User provided reference genes

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