Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 5.3e-122 441.0 223 100.0
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.7e-75 286.6 181 79.0
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 4.7e-70 268.5 211 65.9
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.9e-67 259.2 218 66.1
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 2.7e-65 252.7 218 63.8
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.0e-64 249.2 215 62.8
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.1e-63 247.3 218 64.2
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 4.3e-63 245.4 217 61.8
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 7.3e-63 244.6 225 60.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.8e-61 240.0 215 60.0
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.2e-60 237.3 219 58.4
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.0e-60 236.5 217 58.5
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 5.8e-60 235.0 213 61.0
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.9e-58 229.9 220 57.7
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 5.4e-58 228.4 216 58.3
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.5e-57 225.7 215 60.5
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 8.6e-56 221.1 219 56.2
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.2e-54 217.2 220 53.6
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 4.7e-54 215.3 209 57.4
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 6.2e-54 214.9 209 56.9
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 6.8e-53 211.5 235 54.9
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.2e-52 210.7 221 54.8
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.5e-52 210.3 208 56.2
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.0e-52 209.9 219 54.3
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 5.8e-52 208.4 208 52.9
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 5.8e-52 208.4 215 54.4
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 7.5e-52 208.0 211 55.0
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 9.8e-52 207.6 215 53.5
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.7e-51 206.8 208 54.8
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.2e-51 206.5 213 54.5
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.9e-51 206.1 168 61.9
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 4.9e-51 205.3 213 53.5
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.1e-50 204.1 212 53.3
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.1e-50 204.1 219 53.4
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.4e-50 203.8 210 53.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 3.2e-50 202.6 210 53.3
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 5.4e-50 201.8 215 52.6
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 7.1e-50 201.4 219 54.3
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 9.2e-50 201.1 216 50.9
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 7.8e-49 198.0 213 53.1
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 7.8e-49 198.0 209 51.2
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.6e-48 194.9 184 57.1
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 8.6e-48 194.5 166 60.8
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 8.6e-48 194.5 221 50.2
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.9e-47 193.4 217 51.2
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.5e-47 193.0 215 50.7
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.3e-47 192.2 184 56.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 5.6e-47 191.8 217 50.7
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 7.3e-47 191.4 208 52.4
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 7.3e-47 191.4 215 50.7
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.6e-46 190.3 219 50.2
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.1e-46 189.9 220 52.7
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.8e-46 189.5 216 50.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 6.2e-46 188.3 222 48.6
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.4e-45 187.2 209 47.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 3.1e-45 186.0 218 50.0
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.0e-45 185.7 223 47.5
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 4.0e-45 185.7 206 50.5
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.4e-44 182.6 221 47.5
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.2e-42 176.0 226 47.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 7.1e-42 174.9 211 49.8
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 7.1e-42 174.9 167 56.9
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 3.5e-41 172.6 219 47.9
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.6e-41 172.2 212 45.8
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.3e-40 170.6 203 47.8
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.3e-40 169.9 169 54.4
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.0e-40 169.5 212 43.9
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 3.9e-40 169.1 218 44.5
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.9e-39 166.8 211 45.5
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 3.3e-39 166.0 303 37.6
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 4.3e-39 165.6 186 52.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 5.6e-39 165.2 178 52.8
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.3e-39 164.9 212 43.4
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 9.6e-39 164.5 171 50.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 9.6e-39 164.5 214 43.0
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 4.7e-38 162.2 165 53.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 8.1e-38 161.4 168 54.2
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.1e-37 161.0 208 43.8
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.8e-37 160.2 183 51.4
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 6.9e-37 158.3 156 50.0
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.9e-37 158.3 214 43.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 8.9e-37 157.9 214 43.9
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 8.9e-37 157.9 177 46.9
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.5e-36 157.1 208 41.8
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 4.4e-36 155.6 193 45.6
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 4.4e-36 155.6 210 44.3
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.8e-36 155.2 199 44.2
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 7.6e-36 154.8 219 41.6
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.9e-35 152.9 210 42.4
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.9e-35 152.1 207 43.0
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.4e-34 150.6 178 46.1
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 3.2e-34 149.4 157 48.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.6e-33 147.1 218 41.3
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.7e-33 146.4 219 41.6
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 3.5e-33 146.0 207 42.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 3.5e-33 146.0 219 39.7
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.5e-33 146.0 152 53.3
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 7.8e-33 144.8 139 54.7
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 7.8e-33 144.8 209 42.1
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.0e-32 144.4 176 46.0
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.0e-32 144.4 135 55.6
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.3e-32 144.1 205 43.4
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.7e-32 143.7 135 55.6
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 3.0e-32 142.9 203 41.9
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 8.7e-32 141.4 142 54.2
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.5e-31 140.6 174 40.2
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 2.5e-31 139.8 214 40.2
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 2.5e-31 139.8 201 38.3
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 4.3e-31 139.0 213 39.9
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 9.6e-31 137.9 167 43.7
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.6e-30 137.1 201 38.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 2.8e-30 136.3 172 41.3
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 3.6e-30 136.0 174 44.3
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.8e-30 135.6 195 38.5
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.1e-29 134.4 170 45.3
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.4e-29 134.0 167 43.7
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 2.4e-29 133.3 204 37.3
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.4e-29 133.3 144 48.6
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 4.0e-29 132.5 209 38.8
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.5e-28 130.6 174 43.1
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.0e-28 130.2 144 47.2
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.6e-28 129.8 135 52.6
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.6e-28 129.8 118 53.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 1.3e-27 127.5 216 36.1
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 3.8e-27 125.9 150 46.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 3.8e-27 125.9 133 51.1
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 4.9e-27 125.6 167 42.5
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.1e-26 124.4 175 42.9
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-26 124.0 165 39.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 2.4e-26 123.2 177 36.2
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 5.4e-26 122.1 148 41.9
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.6e-25 120.6 204 36.3
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.3e-24 116.7 130 46.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.0e-24 116.3 120 51.7
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.1e-23 114.4 111 55.9
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.5e-23 113.2 124 46.8
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.5e-23 113.2 132 46.2
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 9.6e-23 111.3 96 55.2
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.8e-22 109.8 125 47.2
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 1.8e-21 107.1 126 41.3
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.0e-21 105.9 131 45.8
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.0e-21 105.9 129 41.9
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.3e-19 100.9 119 42.9
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.2e-19 100.1 137 41.6
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.2e-18 96.3 78 61.5
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 5.5e-18 95.5 154 36.4
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 7.1e-18 95.1 71 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.0e-16 89.7 124 37.1
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-15 87.4 230 33.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.8e-14 82.4 62 61.3
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 6.9e-13 78.6 95 49.5
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.2e-12 77.8 113 38.1
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.0e-12 77.0 170 34.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 7.6e-12 75.1 78 48.7
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.9e-11 73.2 87 46.0
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.8e-11 72.8 87 46.0
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 6.5e-11 72.0 94 42.6
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 9.3e-10 68.2 119 33.6
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 2.7e-09 66.6 69 42.0
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.7e-09 66.6 115 33.9
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 1.0e-08 64.7 214 30.4
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 3.9e-08 62.8 92 37.0
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.9e-08 62.8 39 71.8
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 5.1e-08 62.4 93 35.5
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 1.3e-06 57.8 85 43.5
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 2.1e-06 57.0 55 52.7
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.8e-06 55.8 130 26.9
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 6.3e-06 55.5 94 35.1


User provided reference genes

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