Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 9.6e-158 560.1 275 100.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.4e-143 513.1 273 92.3
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 4.3e-142 508.1 275 89.5
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 5.7e-142 507.7 275 88.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.3e-141 506.5 275 89.1
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.8e-140 502.7 274 88.3
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 3.8e-138 495.0 275 86.9
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 8.5e-138 493.8 275 87.6
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.6e-136 489.6 275 87.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.8e-135 486.1 275 86.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 2.6e-134 482.3 275 84.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 7.4e-134 480.7 275 84.0
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-133 478.8 275 82.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.3e-133 477.6 275 84.7
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.1e-132 473.8 274 82.5
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.0e-131 472.6 271 82.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.0e-131 472.6 273 82.8
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.6e-131 472.2 271 82.7
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.6e-131 472.2 271 82.3
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 4.5e-131 471.5 273 82.1
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 5.9e-131 471.1 272 81.6
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 5.9e-131 471.1 271 81.9
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 7.7e-131 470.7 271 81.9
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.0e-130 470.3 271 81.9
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.7e-130 469.5 275 81.5
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 2.2e-130 469.2 275 80.4
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 2.9e-130 468.8 275 80.4
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 81.9
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 82.7
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 5.0e-130 468.0 272 82.0
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 6.5e-130 467.6 275 80.7
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 8.5e-130 467.2 274 81.8
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.1e-129 466.8 274 80.7
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.5e-129 466.5 275 80.0
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.5e-129 465.7 275 80.0
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.6e-128 463.0 272 80.9
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.7e-128 462.2 275 79.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.7e-128 462.2 272 80.1
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.7e-128 462.2 273 79.9
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.7e-128 462.2 271 81.2
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 4.7e-128 461.5 272 79.8
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 4.7e-128 461.5 275 79.3
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.7e-128 461.5 273 81.0
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.1e-128 461.1 305 74.4
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 6.1e-128 461.1 273 81.0
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 6.1e-128 461.1 271 81.5
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 6.1e-128 461.1 270 80.7
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.0e-127 460.3 270 80.0
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.0e-127 460.3 273 79.9
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.4e-127 459.9 271 80.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 80.1
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 3.0e-127 458.8 273 80.2
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 81.5
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 3.9e-127 458.4 271 79.3
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 79.3
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 78.9
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 78.9
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 2.0e-126 456.1 271 79.3
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 78.9
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 78.9
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 78.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.7e-126 454.5 270 80.0
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 7.4e-126 454.1 271 78.6
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 7.4e-126 454.1 270 79.3
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.3e-125 453.4 269 78.8
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.3e-125 453.4 273 78.8
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.7e-125 453.0 270 80.4
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 4.8e-125 451.4 271 77.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 4.8e-125 451.4 271 79.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.1e-124 450.3 271 79.3
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.1e-124 450.3 271 77.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.1e-124 450.3 273 77.7
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.8e-124 449.5 271 79.0
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 4.1e-124 448.4 273 77.7
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 7.0e-124 447.6 271 77.5
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.6e-123 446.4 271 76.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.7e-122 443.0 270 78.5
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.7e-122 443.0 270 78.5
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.5e-121 439.1 270 75.2
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.5e-121 438.0 270 77.4
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 3.6e-120 435.3 257 80.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 8.0e-120 434.1 273 74.7
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.4e-119 433.3 262 79.4
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 5.2e-119 431.4 302 70.2
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 2.0e-118 429.5 304 69.1
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.7e-117 426.4 271 76.4
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.7e-117 426.4 273 73.3
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 8.3e-117 424.1 275 71.6
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.4e-116 423.3 270 74.8
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 9.1e-116 420.6 274 75.2
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.2e-115 420.2 271 75.3
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.2e-115 420.2 270 73.0
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.7e-115 419.1 261 75.5
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 4.5e-115 418.3 271 71.2
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 7.7e-115 417.5 270 72.2
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 4.7e-112 408.3 271 67.9
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.8e-111 404.4 283 71.4
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.5e-110 403.3 271 67.9
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 7.5e-110 401.0 385 55.1
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 9.8e-110 400.6 270 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.4e-108 396.7 271 66.8
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.4e-108 396.7 241 76.8
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 2.7e-107 392.5 243 76.1
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 3.3e-105 385.6 271 65.7
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.6e-104 383.3 246 72.8
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 8.9e-103 377.5 221 79.6
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.2e-102 377.1 271 69.4
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.4e-100 370.2 220 79.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.1e-97 360.5 271 63.5
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.6e-97 358.2 251 71.3
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 8.3e-93 344.4 197 81.2
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.2e-92 342.4 221 73.3
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 6.0e-91 338.2 271 61.3
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-87 327.4 275 59.3
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 5.2e-87 325.1 271 61.6
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.5e-86 323.6 273 54.9
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.0e-86 323.2 271 61.3
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.7e-82 310.1 288 54.5
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 6.2e-80 301.6 276 56.5
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 3.4e-78 295.8 178 78.1
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.2e-75 287.3 276 51.1
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 5.1e-74 282.0 275 53.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 5.6e-73 278.5 240 60.8
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.2e-72 275.0 168 78.0
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 5.4e-68 261.9 165 81.2
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 4.6e-67 258.8 152 81.6
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 6.6e-66 255.0 152 76.3
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 7.9e-59 231.5 206 58.7
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.4e-52 209.9 157 63.7
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 9.3e-52 208.0 276 45.3
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 7.4e-49 198.4 274 43.4
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.3e-45 187.6 270 43.7
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.2e-45 186.8 171 59.1
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.5e-41 174.1 148 68.2
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.5e-33 146.7 92 70.7
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.6e-32 144.1 261 39.5
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 6.3e-32 142.1 185 47.0
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.4e-31 140.2 269 37.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.9e-28 130.6 79 72.2
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.0e-26 124.8 98 62.2
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.4e-26 124.4 98 63.3
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.9e-26 122.9 140 44.3
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 3.3e-25 119.8 140 43.6
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.9e-19 98.6 73 67.1
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.1e-15 88.2 56 69.6
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.9e-12 77.4 82 48.8
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 3.2e-12 76.6 45 80.0
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.0e-09 67.4 48 68.8
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.0e-06 57.4 42 71.4


User provided reference genes

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