Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 0.0e+00 1741.9 881 100.0
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 0.0e+00 1307.0 766 89.4
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 0.0e+00 1216.1 975 69.5
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 0.0e+00 1203.3 1113 62.0
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 0.0e+00 1107.0 976 65.1
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 5.6e-276 954.5 950 59.7
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 3.8e-272 941.8 954 57.3
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 1.0e-261 907.1 952 56.4
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 2.1e-254 882.9 951 54.9
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 7.4e-228 794.7 945 51.5
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 2.3e-221 773.1 954 49.8
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 4.7e-214 748.8 919 50.9
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 6.9e-125 452.6 925 37.0
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 1.5e-114 418.3 979 34.4
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 4.0e-112 410.2 971 34.3
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 2.0e-111 407.9 969 34.1
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 1.1e-106 392.1 257 80.9
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 3.2e-106 390.6 1018 34.0
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 6.1e-97 359.8 973 31.9
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 4.0e-96 357.1 956 32.8
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 1.3e-94 352.1 970 32.2
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 1.8e-88 331.6 962 32.3
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 2.3e-88 331.3 1003 32.2
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 2.3e-88 331.3 965 31.2
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 2.9e-86 324.3 965 30.8
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 2.9e-86 324.3 945 32.6
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.4e-85 322.0 1030 29.9
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.0e-83 315.8 955 30.6
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 3.0e-83 314.3 973 30.6
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 3.6e-81 307.4 974 30.1
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 2.0e-79 301.6 1084 29.1
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 9.2e-77 292.7 828 31.9
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 9.2e-77 292.7 921 30.3
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 1.2e-76 292.4 978 29.0
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.9e-74 285.0 936 31.0
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 3.3e-74 284.3 1015 30.1
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 4.0e-72 277.3 947 30.5
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 5.8e-71 273.5 1014 28.2
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 8.3e-70 269.6 908 30.0
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 2.4e-69 268.1 982 28.1
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 5.1e-67 260.4 994 28.7
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 2.3e-64 251.5 946 28.0
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 8.9e-64 249.6 722 32.4
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 2.9e-62 244.6 1057 28.5
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 8.4e-62 243.0 994 28.8
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 3.2e-61 241.1 896 28.7
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 7.1e-61 240.0 1014 27.1
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 1.6e-60 238.8 904 29.1
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 2.7e-60 238.0 706 32.0
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 1.3e-59 235.7 958 28.4
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 6.6e-59 233.4 904 28.3
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 1.1e-58 232.6 1019 27.9
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 2.5e-58 231.5 755 31.1
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 8.9e-56 223.0 951 28.3
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 2.2e-54 218.4 954 27.4
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 2.4e-53 214.9 790 30.1
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.3e-51 209.1 1017 26.0
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 3.9e-51 207.6 962 26.3
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 5.6e-50 203.8 1013 25.3
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 2.4e-48 198.4 1007 25.1
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 3.1e-48 198.0 804 27.2
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 6.4e-46 190.3 872 26.9
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 9.3e-45 186.4 821 27.3
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 1.1e-42 179.5 957 27.1
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 2.1e-41 175.3 897 27.0
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 2.1e-41 175.3 891 25.6
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 2.8e-41 174.9 895 24.1
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 2.0e-39 168.7 1079 25.7
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 9.3e-37 159.8 458 30.6
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 4.3e-34 151.0 434 30.9
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 1.4e-32 146.0 441 30.4
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 3.1e-32 144.8 912 24.7
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 7.6e-31 140.2 734 26.4
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 2.5e-29 135.2 692 25.3
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 1.2e-28 132.9 720 26.0
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 1.1e-26 126.3 233 36.1
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 1.3e-25 122.9 461 28.4
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 5.3e-24 117.5 653 26.6
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 1.7e-22 112.5 700 25.0
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 2.5e-21 108.6 151 39.1
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 2.4e-16 92.0 233 30.9
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 3.9e-11 74.7 160 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 3.9e-11 74.7 98 37.8
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-09 67.0 128 32.0
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 3.1e-08 65.1 419 25.5
Aqoxy1G00416 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 4.1e-08 64.7 88 39.8
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 1.5e-07 62.8 58 51.7


User provided reference genes

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