Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 6.4e-296 1020.0 520 100.0
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 4.4e-260 901.0 518 86.9
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 3.1e-258 894.8 518 86.5
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 1.7e-232 809.3 519 78.8
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 4.1e-226 788.1 492 78.7
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 4.3e-223 778.1 519 74.0
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 5.2e-197 691.4 384 88.3
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 7.6e-196 687.6 521 68.7
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 3.9e-192 675.2 519 67.2
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 4.3e-191 671.8 489 68.5
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 6.2e-190 667.9 484 68.2
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 3.0e-184 649.0 499 64.9
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 4.3e-183 645.2 510 63.1
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 7.3e-183 644.4 393 79.6
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 9.6e-183 644.0 490 64.1
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.1e-182 642.9 509 64.4
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 3.1e-181 639.0 517 62.3
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 7.6e-180 634.4 535 62.6
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 7.6e-180 634.4 508 62.4
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 3.8e-179 632.1 515 61.2
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 2.4e-178 629.4 516 62.6
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 9.3e-178 627.5 515 61.0
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 1.9e-175 619.8 485 61.6
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.3e-174 617.1 518 61.8
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 9.0e-173 610.9 518 61.2
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 2.6e-172 609.4 521 58.7
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 1.0e-171 607.4 521 58.9
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 4.2e-170 602.1 484 61.0
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 4.3e-167 592.0 518 60.6
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 2.1e-166 589.7 507 58.2
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 8.2e-166 587.8 487 59.1
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 1.4e-165 587.0 539 56.0
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 2.0e-164 583.2 514 58.6
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.3e-163 580.5 523 56.4
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.2e-163 579.7 548 55.5
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 1.1e-159 567.4 486 58.2
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 4.8e-158 562.0 476 59.5
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.2e-156 557.4 514 55.1
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.5e-154 549.7 525 57.3
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 4.2e-154 548.9 476 57.1
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 4.6e-153 545.4 426 63.6
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 7.9e-153 544.7 487 58.9
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 6.7e-152 541.6 515 53.8
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 5.7e-151 538.5 480 54.6
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 7.4e-151 538.1 519 55.5
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.2e-150 536.6 519 54.5
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 1.1e-149 534.3 477 54.3
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.9e-147 526.2 475 56.4
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 5.5e-146 521.9 517 52.0
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 7.2e-146 521.5 516 52.1
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 7.2e-146 521.5 432 59.3
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.6e-145 520.4 474 55.1
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 2.7e-145 519.6 484 55.8
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 9.7e-143 511.1 474 54.6
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 3.7e-142 509.2 519 52.8
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 1.5e-140 503.8 513 50.9
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 3.8e-139 499.2 543 48.8
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 6.5e-139 498.4 477 52.6
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.5e-138 497.3 412 60.4
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 3.2e-138 496.1 516 51.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.4e-136 490.7 516 52.1
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 8.8e-136 488.0 321 73.2
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 3.1e-133 479.6 539 50.3
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 4.2e-130 469.2 545 46.1
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 7.2e-130 468.4 381 59.8
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.5e-127 460.7 454 54.8
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 7.5e-127 458.4 536 46.3
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 9.8e-127 458.0 474 51.1
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 4.8e-126 455.7 500 49.8
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 5.4e-125 452.2 525 45.3
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 9.1e-125 451.4 478 49.8
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 5.9e-124 448.7 480 47.9
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 7.7e-124 448.4 513 47.2
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 1.0e-123 448.0 539 45.5
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 1.1e-122 444.5 482 49.0
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 1.1e-122 444.5 406 54.9
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 7.2e-122 441.8 481 48.6
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 2.0e-119 433.7 535 47.3
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 7.5e-119 431.8 472 49.6
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 7.5e-119 431.8 472 49.6
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 1.2e-116 424.5 480 47.7
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 2.7e-116 423.3 467 49.5
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 3.5e-116 422.9 467 49.5
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 4.5e-116 422.5 300 65.7
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 3.8e-115 419.5 316 61.4
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 3.8e-115 419.5 452 50.0
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 5.0e-115 419.1 514 44.4
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 2.9e-110 403.3 387 54.5
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 6.4e-110 402.1 510 44.5
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.6e-108 397.5 416 49.0
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 3.0e-107 393.3 351 59.5
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 4.4e-103 379.4 317 57.4
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 7.0e-101 372.1 482 41.7
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 2.0e-95 354.0 529 40.5
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.4e-93 347.8 441 46.0
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 1.9e-93 347.4 422 46.2
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 3.5e-84 316.6 416 41.6
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.6e-79 300.4 320 53.8
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.4e-77 294.7 215 62.3
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 1.6e-68 264.6 313 51.8
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.5e-66 257.3 177 68.4
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 3.6e-65 253.4 195 70.3
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.3e-54 218.4 167 61.1
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.2e-54 217.6 211 58.3
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.1e-45 188.7 167 61.1
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.2e-45 187.2 148 68.2
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 3.6e-44 183.7 210 52.9
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 7.9e-44 182.6 144 68.1
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 7.9e-28 129.4 129 56.6
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 1.3e-17 95.5 68 73.5
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 6.3e-17 93.2 163 31.3
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 2.2e-14 84.7 79 58.2
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 5.5e-13 80.1 174 29.9
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-12 78.6 59 57.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.4e-08 65.5 42 66.7
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 3.8e-06 57.4 49 57.1


User provided reference genes

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