Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.0e-192 675.6 348 100.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 3.3e-147 525.4 367 76.3
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.7e-146 523.1 365 74.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.8e-143 511.9 364 73.9
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.3e-140 502.7 365 71.2
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 5.7e-139 498.0 325 80.0
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.7e-138 496.5 365 70.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 8.2e-138 494.2 336 74.1
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.6e-136 489.2 364 72.0
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.2e-133 480.3 340 74.1
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.4e-132 476.9 371 67.1
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-111 407.1 360 59.7
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.6e-110 401.7 359 59.3
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.1e-109 399.8 329 63.2
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.8e-108 396.7 360 57.2
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.2e-106 389.8 368 56.5
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.2e-105 386.0 355 56.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.6e-104 382.1 364 55.5
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.0e-103 380.9 355 56.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.0e-103 380.9 358 57.3
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.3e-103 380.6 360 55.0
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.3e-103 380.6 357 57.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.0e-103 379.4 360 56.4
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 6.6e-103 378.3 358 57.3
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.9e-102 376.7 356 57.0
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.3e-102 375.6 356 55.3
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.3e-102 375.6 381 53.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.3e-102 374.8 356 55.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.2e-101 374.0 356 56.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 6.2e-101 371.7 360 54.7
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 8.0e-101 371.3 357 55.2
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.4e-100 370.5 356 54.8
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.8e-100 370.2 363 54.8
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 4.0e-100 369.0 356 56.2
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 6.8e-100 368.2 358 56.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 3.4e-99 365.9 335 57.0
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.7e-98 362.5 369 52.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.2e-97 359.4 356 53.7
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 4.1e-97 359.0 361 54.8
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 5.4e-97 358.6 356 52.8
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.7e-96 356.3 355 53.2
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.5e-96 355.9 355 53.5
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.8e-96 354.8 362 53.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.7e-95 353.6 356 52.0
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.3e-95 353.2 239 77.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.9e-95 352.4 356 54.2
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 3.9e-95 352.4 359 51.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.9e-95 352.4 358 54.5
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 6.6e-95 351.7 355 52.7
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.5e-94 350.5 365 54.2
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.3e-94 349.4 347 55.3
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.1e-93 346.7 355 52.7
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 3.6e-93 345.9 355 52.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 4.7e-93 345.5 355 52.4
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 6.2e-93 345.1 356 53.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 6.2e-93 345.1 362 51.1
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.1e-92 344.4 355 52.1
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.1e-92 344.4 355 52.1
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.4e-92 344.0 349 54.2
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.8e-92 343.6 349 54.2
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.3e-92 343.2 355 52.7
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.1e-92 342.8 357 51.3
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.2e-91 340.9 359 51.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.4e-91 339.0 359 50.7
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 5.8e-91 338.6 359 51.5
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 7.5e-91 338.2 359 48.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.2e-90 336.7 359 49.9
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.2e-89 332.8 347 52.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 4.1e-89 332.4 314 56.4
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.7e-88 329.7 361 49.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.5e-88 329.3 347 52.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.0e-87 327.8 359 52.1
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.1e-85 318.2 358 50.0
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-84 317.8 453 42.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.4e-84 317.4 355 50.1
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.4e-84 317.4 468 42.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 4.0e-84 315.8 360 46.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.2e-83 314.3 378 46.3
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.3e-82 310.8 370 47.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.4e-82 308.1 359 47.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 4.6e-80 302.4 324 51.5
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 5.1e-79 298.9 341 47.8
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.9e-78 297.0 272 56.2
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 3.3e-78 296.2 314 50.6
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 5.8e-75 285.4 325 51.1
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.2e-74 283.5 385 43.6
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 6.4e-74 282.0 207 65.7
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.4e-73 280.8 271 52.8
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.2e-73 279.3 334 47.0
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 4.2e-73 279.3 321 49.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.6e-72 275.8 323 48.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 8.7e-71 271.6 368 43.5
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 8.7e-71 271.6 434 43.8
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 9.6e-70 268.1 353 46.2
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 6.9e-68 261.9 366 42.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.9e-65 253.8 381 42.3
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 9.3e-65 251.5 185 70.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.2e-64 251.1 362 40.3
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.1e-64 250.4 320 46.6
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.7e-63 247.3 263 51.0
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.3e-62 243.0 240 52.5
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-61 241.1 234 55.1
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.6e-61 240.7 254 51.6
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.6e-61 239.6 216 58.3
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.1e-60 238.0 217 57.1
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 5.8e-59 232.3 362 40.3
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 3.7e-53 213.0 353 36.3
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.8e-52 210.7 288 43.4
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 3.4e-51 206.5 137 79.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.2e-49 199.9 143 68.5
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-49 199.9 213 49.8
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.0e-47 194.9 351 37.6
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 5.1e-47 192.6 203 48.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 7.4e-46 188.7 395 33.9
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.1e-44 183.0 253 45.1
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.6e-40 169.9 216 47.2
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.4e-36 157.9 99 82.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.8e-31 141.0 81 88.9
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.0e-30 137.5 157 47.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.6e-30 137.1 163 49.1
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.3e-29 134.8 108 60.2
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.3e-29 132.5 146 47.9
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.2e-27 128.3 384 29.9
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-26 124.8 117 55.6
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.2e-25 120.2 199 37.2
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.7e-24 117.1 302 30.8
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 7.9e-24 115.5 87 66.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.8e-21 106.3 90 52.2
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.5e-18 95.5 64 75.0
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.5e-18 95.5 148 41.9
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 7.2e-17 92.4 146 36.3
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.0e-16 89.0 75 58.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.0e-16 89.0 75 58.7
Psat0ss26165g0120 Pisum sativum HOM05D004949 ORTHO05D006006 1.0e-15 88.6 63 76.2
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.8e-15 87.8 75 57.3
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-14 84.7 75 57.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.7e-13 80.1 135 40.7
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.7e-13 80.1 48 83.3
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 3.7e-13 80.1 46 87.0
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 6.8e-07 59.3 44 61.4
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-06 57.8 47 53.2


User provided reference genes

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