Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14039_v3 Cicer arietinum L. HOM05D011348 ORTHO05D013852 5.1e-66 254.2 123 100.0
Ca_01973_v3 Cicer arietinum L. HOM05D011348 ORTHO05D013852 1.9e-52 209.1 122 82.0
Ca_22015_v3 Cicer arietinum L. HOM05D011348 ORTHO05D013852 8.2e-32 140.6 122 60.7
Ca_30502_v3 Cicer arietinum L. HOM05D011348 ORTHO05D013852 8.2e-32 140.6 122 60.7
Ca_18325_v3 Cicer arietinum L. HOM05D011348 ORTHO05D013852 2.2e-24 115.9 70 82.9
Medtr6g022330 Medicago truncatula HOM05D008874 ORTHO05D012000 9.0e-23 110.5 100 53.0
Medtr5g061200 Medicago truncatula HOM05D011348 ORTHO05D013852 6.5e-21 104.4 106 43.4
Psat5g202400 Pisum sativum HOM05D008874 ORTHO05D012000 2.7e-19 99.0 100 49.0
TPR.G39768 Trifolium pratense HOM05D011348 ORTHO05D013852 5.7e-17 91.3 99 40.4
Ca_04606_v3 Cicer arietinum L. HOM05D011348 ORTHO05D013852 2.2e-16 89.4 51 82.4
Psat7g181600 Pisum sativum HOM05D008874 ORTHO05D012000 1.4e-15 86.7 98 44.9
Glyma.08G336900 Glycine max HOM05D000872 ORTHO05D000777 1.2e-14 83.6 102 39.2
Glyma.12G168100 Glycine max HOM05D011348 ORTHO05D010633 1.9e-12 76.3 100 39.0
Glyma.13G055900 Glycine max HOM05D011348 ORTHO05D013852 1.9e-12 76.3 100 35.0
Psat4g074960 Pisum sativum HOM05D008874 ORTHO05D012000 3.2e-12 75.5 98 37.8
Psat6g241360 Pisum sativum HOM05D018450 ORTHO05D020969 4.2e-12 75.1 99 35.4
Psat6g033000 Pisum sativum HOM05D008874 ORTHO05D012000 1.4e-10 70.1 86 41.9
Lj2g0005801 Lotus japonicus HOM05D065019 ORTHO05D010633 1.8e-10 69.7 99 37.4
Psat4g069160 Pisum sativum HOM05D008874 ORTHO05D012000 3.9e-10 68.6 75 45.3
Glyma.20G238351 Glycine max HOM05D011348 ORTHO05D013852 5.1e-10 68.2 97 34.0
TPR.G9870 Trifolium pratense HOM05D008380 ORTHO05D010633 8.8e-10 67.4 118 39.8
Psat4g145400 Pisum sativum HOM05D001774 ORTHO05D001663 1.1e-09 67.0 54 53.7
TPR.G5125 Trifolium pratense HOM05D000011 ORTHO05D000157 1.5e-09 66.6 101 31.7
Lj1g0022732 Lotus japonicus HOM05D065019 ORTHO05D010633 7.4e-09 64.3 96 37.5
Glyma.15G148100 Glycine max HOM05D011348 ORTHO05D013852 2.8e-08 62.4 93 37.6
TPR.G40323 Trifolium pratense HOM05D000017 ORTHO05D000013 3.7e-08 62.0 96 30.2
Ah.10g025880 Amaranthus hybridus HOM05D009581 ORTHO05D004107 6.3e-08 61.2 118 32.2
SGA_v2.0_scaffold43G16300 Striga asiatica HOM05D008540 ORTHO05D009454 1.1e-07 60.5 117 34.2
Psat2g144840 Pisum sativum HOM05D008380 ORTHO05D010633 1.4e-07 60.1 99 33.3
SGA_v2.0_scaffold317G48444 Striga asiatica HOM05D008540 ORTHO05D009454 1.4e-07 60.1 118 34.7
SGA_v2.0_scaffold3G01511 Striga asiatica HOM05D008540 ORTHO05D009454 1.8e-07 59.7 97 34.0
VMungo0720G0547 Vigna mungo HOM05D000017 ORTHO05D009934 1.8e-07 59.7 50 54.0
VMungo0720G2969 Vigna mungo HOM05D000458 ORTHO05D000951 1.8e-07 59.7 98 40.8
Psat6g027160 Pisum sativum HOM05D008874 ORTHO05D012000 3.1e-07 58.9 65 41.5
VMungo0331G1062 Vigna mungo HOM05D000005 ORTHO05D000012 3.1e-07 58.9 119 32.8
SGA_v2.0_scaffold35G14227 Striga asiatica HOM05D008540 ORTHO05D009454 5.3e-07 58.2 97 34.0
Dinv28159 Davidia involucrata HOM05D012890 ORTHO05D004107 1.2e-06 57.0 102 34.3
SGA_v2.0_scaffold39G15240 Striga asiatica HOM05D008540 ORTHO05D009454 2.0e-06 56.2 97 33.0
SGA_v2.0_scaffold84G26477 Striga asiatica HOM05D008540 ORTHO05D009454 2.0e-06 56.2 118 34.7
PGSC0003DMG400035494 Solanum tuberosum HOM05D004064 ORTHO05D009909 2.6e-06 55.8 97 34.0
VMungo0331G0768 Vigna mungo HOM05D008773 ORTHO05D009934 2.6e-06 55.8 99 36.4
Nitab4.5_0000147g0090 Nicotiana tabacum HOM05D000017 ORTHO05D001349 3.4e-06 55.5 108 33.3
VMungo0540G0461 Vigna mungo HOM05D008773 ORTHO05D009934 3.4e-06 55.5 76 42.1
Psat1g019080 Pisum sativum HOM05D016830 ORTHO05D020969 4.5e-06 55.1 82 39.0
SGA_v2.0_scaffold189G40365 Striga asiatica HOM05D008540 ORTHO05D009454 4.5e-06 55.1 85 35.3
Psat4g057920 Pisum sativum HOM05D018450 ORTHO05D020969 5.9e-06 54.7 93 35.5
VMungo0251G3387 Vigna mungo HOM05D008773 ORTHO05D009934 5.9e-06 54.7 98 32.7
Psat6g027000 Pisum sativum HOM05D008380 ORTHO05D010633 7.7e-06 54.3 99 32.3
VMungo0331G1278 Vigna mungo HOM05D000017 ORTHO05D000013 7.7e-06 54.3 97 32.0


User provided reference genes

Program Settings