Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 2.6e-72 275.4 148 100.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.2e-66 256.5 148 91.9
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.6e-66 256.1 148 91.9
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.0e-65 253.4 148 90.5
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 4.8e-63 244.6 146 89.0
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.8e-63 244.6 146 87.7
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 6.3e-63 244.2 146 88.4
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.4e-62 243.0 140 90.7
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.4e-62 243.0 149 87.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 2.4e-62 242.3 146 87.7
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 9.1e-62 240.4 144 86.8
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.7e-60 236.1 149 83.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.7e-60 236.1 149 83.9
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.7e-60 236.1 146 86.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 6.5e-60 234.2 149 83.2
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.1e-59 233.4 146 84.9
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.5e-59 233.0 149 83.2
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.1
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.1
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 4.2e-59 231.5 149 82.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 4.2e-59 231.5 148 81.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 7.2e-59 230.7 149 81.9
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 9.4e-59 230.3 145 84.1
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.2e-58 229.9 147 81.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.1e-58 229.2 144 84.0
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.7e-58 228.8 146 83.6
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.7e-58 228.8 142 82.4
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 3.6e-58 228.4 150 82.7
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 4.7e-58 228.0 148 78.4
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.7e-58 228.0 148 80.4
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 4.7e-58 228.0 148 80.4
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 6.1e-58 227.6 145 82.1
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 6.1e-58 227.6 144 81.9
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 6.1e-58 227.6 142 84.5
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 81.8
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 79.7
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 79.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.4e-57 226.5 148 83.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 79.7
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 2.3e-57 225.7 147 82.3
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 80.4
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 79.7
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 3.0e-57 225.3 146 82.2
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 3.0e-57 225.3 148 79.7
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.0e-57 225.3 149 79.2
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.0e-57 224.9 141 83.0
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 4.0e-57 224.9 145 80.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 4.0e-57 224.9 145 80.0
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.2e-57 224.6 147 79.6
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 149 81.2
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 8.8e-57 223.8 148 81.8
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.2e-56 223.4 140 84.3
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.5e-56 223.0 143 79.0
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 145 79.3
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.0e-56 222.6 142 79.6
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.0e-56 222.6 145 80.0
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 2.0e-56 222.6 148 80.4
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.0e-56 222.6 149 78.5
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.6e-56 222.2 149 78.5
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.3e-56 221.9 149 78.5
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 3.3e-56 221.9 147 80.3
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.4e-56 221.5 149 77.9
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 4.4e-56 221.5 137 81.8
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 5.7e-56 221.1 140 82.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 5.7e-56 221.1 148 75.7
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.7e-56 221.1 145 80.7
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 7.5e-56 220.7 146 78.1
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 9.7e-56 220.3 149 78.5
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 79.3
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 79.3
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 78.6
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.3e-55 219.9 144 79.9
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.7e-55 219.5 148 79.7
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.7e-55 219.5 148 79.1
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.7e-55 219.5 145 78.6
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.2e-55 219.2 148 79.7
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.8e-55 218.8 148 79.7
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-55 218.4 145 77.2
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.8e-55 218.0 140 81.4
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.8e-55 218.0 140 81.4
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 6.3e-55 217.6 148 77.0
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 8.2e-55 217.2 148 78.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.8e-54 216.1 135 82.2
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 2.4e-54 215.7 149 76.5
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 2.4e-54 215.7 134 82.1
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.4e-54 215.7 146 79.5
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 3.1e-54 215.3 148 77.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 5.3e-54 214.5 147 77.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 5.3e-54 214.5 147 77.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.0e-54 214.2 137 81.0
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 3.5e-53 211.8 137 78.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.5e-53 211.5 147 75.5
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 4.5e-53 211.5 148 74.3
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 4.5e-53 211.5 137 78.1
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 7.7e-53 210.7 140 75.7
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.3e-52 209.9 140 75.7
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 76.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.3e-52 209.9 147 75.5
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.2e-52 209.1 149 73.8
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.8e-52 208.4 146 76.0
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.1e-51 206.8 134 78.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.2e-50 203.4 143 74.8
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.1e-50 202.6 147 72.8
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 6.1e-50 201.1 147 73.5
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.0e-48 196.1 140 75.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 4.4e-48 194.9 125 81.6
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 5.7e-48 194.5 140 74.3
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 5.7e-48 194.5 135 72.6
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-47 193.4 140 72.9
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.2e-47 192.6 140 72.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.8e-47 192.2 139 74.1
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-47 192.2 139 74.1
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.8e-47 192.2 139 74.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 6.3e-47 191.0 140 72.1
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.1e-46 190.3 136 72.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 71.9
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.8e-46 189.5 148 65.5
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 2.4e-46 189.1 138 70.3
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.4e-46 189.1 142 73.2
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 2.4e-46 189.1 134 73.9
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.1e-46 188.7 143 72.7
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 5.4e-46 188.0 140 72.9
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.3e-44 182.6 144 69.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.8e-44 181.8 147 70.1
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.8e-44 181.8 140 72.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 3.8e-44 181.8 116 78.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 5.0e-44 181.4 140 72.1
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 5.0e-44 181.4 147 70.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 1.2e-42 176.8 140 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.1e-42 176.0 148 60.8
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 4.7e-42 174.9 120 78.3
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.5e-40 169.9 140 67.9
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 4.1e-38 161.8 134 61.2
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 8.6e-36 154.1 142 56.3
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 9.5e-35 150.6 139 59.7
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.3e-33 146.0 132 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.3e-31 140.2 118 58.5
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.7e-31 138.7 140 56.4
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.2e-24 117.1 109 61.5
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-23 113.6 104 62.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 8.3e-23 110.9 88 68.2
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.4e-22 108.2 138 42.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.0e-20 104.0 139 41.0
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.9e-14 83.2 87 49.4
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 6.0e-13 78.2 55 70.9


User provided reference genes

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