Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 8.7e-91 337.0 180 100.0
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.6e-71 272.3 176 86.9
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.1e-69 266.9 184 84.2
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 5.1e-67 258.1 176 79.5
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 4.3e-66 255.0 175 78.9
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 2.4e-64 249.2 169 79.9
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 3.1e-64 248.8 175 76.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.2e-63 246.9 175 77.1
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 5.9e-63 244.6 180 76.1
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.8e-62 241.9 169 77.5
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.8e-59 233.0 190 70.0
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.4e-56 222.6 184 69.0
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.4e-56 222.6 184 69.0
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.6e-52 209.9 201 62.7
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 2.1e-52 209.5 182 67.6
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 7.9e-52 207.6 179 65.4
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.0e-51 207.2 182 65.9
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.4e-51 206.8 177 66.1
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.8e-51 206.5 182 67.0
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.0e-51 205.7 182 65.9
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 5.2e-51 204.9 181 65.7
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 8.8e-51 204.1 183 65.0
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.1e-50 203.8 179 67.0
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-50 203.8 182 65.4
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 7.4e-50 201.1 186 65.1
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 9.7e-50 200.7 184 65.2
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.3e-49 200.3 181 64.1
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.3e-49 200.3 186 64.5
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.7e-49 199.9 182 64.3
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.7e-49 199.9 182 64.3
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 2.2e-49 199.5 189 63.5
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.8e-49 199.1 125 82.4
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 6.3e-49 198.0 187 64.2
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.1e-48 197.2 191 64.9
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.8e-48 196.4 187 63.6
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.8e-48 196.4 187 63.6
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 5.3e-48 194.9 180 63.9
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 7.0e-48 194.5 191 61.3
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.6e-47 193.4 186 62.4
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.0e-47 193.0 190 62.1
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 2.0e-47 193.0 185 67.0
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 2.6e-47 192.6 191 62.3
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 3.5e-47 192.2 186 63.4
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 4.5e-47 191.8 186 63.4
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 4.5e-47 191.8 180 61.1
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 5.9e-47 191.4 180 61.1
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 5.9e-47 191.4 178 64.0
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 7.7e-47 191.0 184 62.5
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 7.7e-47 191.0 181 61.9
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.3e-46 190.3 186 62.9
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.9e-46 189.1 195 60.5
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 5.0e-46 188.3 180 62.8
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 8.5e-46 187.6 120 80.8
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.9e-45 186.4 180 62.8
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 3.2e-45 185.7 195 60.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 5.5e-45 184.9 186 61.8
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 7.2e-45 184.5 185 58.9
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 7.2e-45 184.5 181 61.9
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 9.4e-45 184.1 184 62.0
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 9.4e-45 184.1 187 61.0
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 1.6e-44 183.3 192 57.8
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 1.6e-44 183.3 189 60.8
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.1e-44 183.0 176 60.8
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 3.6e-44 182.2 184 59.2
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 3.6e-44 182.2 191 59.2
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 3.6e-44 182.2 191 57.6
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 6.1e-44 181.4 181 60.8
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.4e-43 180.3 179 60.9
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.8e-43 179.9 179 61.5
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.8e-43 179.9 180 61.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 5.2e-43 178.3 121 79.3
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 5.2e-43 178.3 187 57.2
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 8.8e-43 177.6 179 60.3
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 8.8e-43 177.6 188 58.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 8.8e-43 177.6 178 60.7
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 8.8e-43 177.6 178 60.7
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.2e-42 177.2 131 72.5
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 3.3e-42 175.6 186 57.0
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 5.7e-42 174.9 178 60.7
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 7.5e-42 174.5 190 55.8
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 2.8e-41 172.6 196 57.7
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 4.8e-41 171.8 182 57.1
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 4.8e-41 171.8 182 57.1
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 8.2e-41 171.0 178 59.6
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 8.2e-41 171.0 182 57.1
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 1.4e-40 170.2 194 56.7
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 1.8e-40 169.9 232 50.0
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.0e-39 166.4 186 53.2
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 7.7e-39 164.5 187 54.5
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.0e-38 164.1 185 56.2
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.7e-38 163.3 140 66.4
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 2.9e-38 162.5 182 57.7
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.8e-38 162.2 185 56.8
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-37 160.6 161 62.1
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 1.5e-37 160.2 184 55.4
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 1.9e-37 159.8 180 54.4
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.9e-37 159.8 172 57.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.9e-37 159.8 186 53.8
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.0e-35 152.5 196 50.5
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 5.2e-35 151.8 190 54.2
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.8e-32 143.3 185 54.6
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.1e-32 142.5 184 51.1
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 4.1e-32 142.1 129 62.0
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.3e-30 136.3 192 48.4
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.8e-30 135.6 123 57.7
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 6.5e-30 134.8 193 47.7
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.2e-29 132.5 96 77.1
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 3.2e-29 132.5 177 51.4
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.8e-27 126.7 124 59.7
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 2.3e-27 126.3 157 52.2
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 6.8e-27 124.8 248 39.1
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.8e-27 124.8 160 49.4
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 2.0e-26 123.2 125 56.0
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 3.4e-26 122.5 177 52.0
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 5.7e-26 121.7 95 73.7
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.8e-25 119.4 191 45.5
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.3e-25 118.2 90 73.3
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 5.4e-24 115.2 126 53.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.2e-23 114.0 131 51.9
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 2.0e-23 113.2 160 45.0
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.3e-22 109.8 187 47.1
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 5.2e-19 98.6 190 42.6
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 4.9e-17 92.0 96 57.3
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.2e-15 87.4 67 62.7
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.5e-15 85.9 64 79.7
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 7.8e-15 84.7 107 46.7
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 4.3e-13 79.0 104 45.2
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 5.6e-13 78.6 126 45.2
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 7.3e-13 78.2 98 50.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 7.5e-10 68.2 64 57.8
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 2.2e-09 66.6 55 72.7
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 2.9e-09 66.2 80 50.0
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 2.9e-09 66.2 80 50.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 4.9e-09 65.5 81 50.6
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 1.6e-07 60.5 80 48.8
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 3.5e-07 59.3 60 56.7
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.0e-06 57.8 96 40.6
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.0e-06 55.5 43 76.7


User provided reference genes

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