Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13960_v3 Cicer arietinum L. HOM05D000036 ORTHO05D016457 3.4e-62 241.5 122 100.0
Psat1g139160 Pisum sativum HOM05D000036 ORTHO05D000095 1.4e-31 139.8 110 70.9
Medtr2g044880 Medicago truncatula HOM05D000036 ORTHO05D000095 1.3e-29 133.3 120 67.5
TPR.G27245 Trifolium pratense HOM05D000036 ORTHO05D000095 6.4e-29 131.0 109 64.2
Glyma.15G184400 Glycine max HOM05D000036 ORTHO05D000095 5.6e-25 117.9 103 63.1
Lj6g0016820 Lotus japonicus HOM05D000036 ORTHO05D000095 6.2e-24 114.4 115 59.1
Glyma.09G077100 Glycine max HOM05D000036 ORTHO05D000095 1.1e-23 113.6 77 74.0
Lalb_Chr08g0232921 Lupinus albus HOM05D000036 ORTHO05D000095 3.1e-23 112.1 104 62.5
VMungo1309G1894 Vigna mungo HOM05D000036 ORTHO05D000095 2.0e-22 109.4 104 62.5
Phvul.009G222100 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 1.3e-21 106.7 114 57.0
arahy.Tifrunner.gnm1.ann1.IFFV7U Arachis hypogaea HOM05D000036 ORTHO05D000095 8.4e-21 104.0 74 70.3
arahy.Tifrunner.gnm1.ann1.HK8QN4 Arachis hypogaea HOM05D000036 ORTHO05D000095 1.1e-20 103.6 74 71.6
Haze_26079 Corylus avellana HOM05D000036 ORTHO05D000095 5.4e-20 101.3 105 55.2
Cfa002930 Carpinus fangiana HOM05D000036 ORTHO05D000095 1.3e-18 96.7 100 53.0
MD15G1224900 Malus domestica HOM05D000036 ORTHO05D000095 1.7e-18 96.3 98 52.0
arahy.Tifrunner.gnm1.ann1.42QIIL Arachis hypogaea HOM05D000036 ORTHO05D000095 3.0e-18 95.5 114 51.8
arahy.Tifrunner.gnm1.ann1.HLP03A Arachis hypogaea HOM05D000036 ORTHO05D000095 3.0e-18 95.5 114 51.8
Lalb_Chr13g0299141 Lupinus albus HOM05D000036 ORTHO05D000095 3.0e-18 95.5 98 57.1
Psat0s1781g0040 Pisum sativum HOM05D000036 ORTHO05D000095 6.6e-18 94.4 106 53.8
Lalb_Chr12g0200371 Lupinus albus HOM05D000036 ORTHO05D000095 1.5e-17 93.2 107 53.3
THA.LOC104803701 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 1.5e-17 93.2 92 53.3
Prupe.7G190300 Prunus persica HOM05D000036 ORTHO05D000095 1.9e-17 92.8 100 49.0
CANSAT40G0001 Cannabis sativa HOM05D000036 ORTHO05D000095 2.5e-17 92.4 71 63.4
Peaxi162Scf00452g00008 Petunia axillaris HOM05D000036 ORTHO05D000095 4.3e-17 91.7 94 50.0
Dinv25496 Davidia involucrata HOM05D000036 ORTHO05D000095 5.6e-17 91.3 93 52.7
MD02G1104600 Malus domestica HOM05D000036 ORTHO05D000095 5.6e-17 91.3 97 50.5
RcHm_v2.0_Chr2g0096461 Rosa chinensis HOM05D000036 ORTHO05D000095 9.6e-17 90.5 92 51.1
QL11p003386 Quercus lobata HOM05D000036 ORTHO05D000095 3.6e-16 88.6 72 61.1
SalBow5G0574 Salvia bowleyana HOM05D000036 ORTHO05D000095 3.6e-16 88.6 69 62.3
Gorai.010G094800 Gossypium raimondii HOM05D000036 ORTHO05D000095 6.2e-16 87.8 105 44.8
PGSC0003DMG400015933 Solanum tuberosum HOM05D000036 ORTHO05D000095 6.2e-16 87.8 71 60.6
Cpa.g.sc344.2 Carica papaya HOM05D000036 ORTHO05D000095 1.4e-15 86.7 70 58.6
Glyma.17G044500 Glycine max HOM05D000036 ORTHO05D000095 1.8e-15 86.3 104 48.1
Gohir.D06G081500 Gossypium hirsutum HOM05D000036 ORTHO05D000095 1.8e-15 86.3 104 45.2
Glyma.13G115400 Glycine max HOM05D000036 ORTHO05D000095 2.4e-15 85.9 101 48.5
Nitab4.5_0003016g0020 Nicotiana tabacum HOM05D000036 ORTHO05D000095 2.4e-15 85.9 97 48.5
Sabra06G0105600 Salix brachista HOM05D000036 ORTHO05D000095 2.4e-15 85.9 100 47.0
Solyc07g017600.3 Solanum lycopersicum HOM05D000036 ORTHO05D000095 2.4e-15 85.9 101 49.5
CiPaw.03G199400 Carya illinoinensis HOM05D000036 ORTHO05D000095 3.1e-15 85.5 105 48.6
Gohir.A06G084600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 3.1e-15 85.5 106 44.3
TPR.G14553 Trifolium pratense HOM05D000036 ORTHO05D000095 3.1e-15 85.5 109 48.6
Ca_21347_v3 Cicer arietinum L. HOM05D000036 ORTHO05D000095 4.0e-15 85.1 96 46.9
Ca_29805_v3 Cicer arietinum L. HOM05D000036 ORTHO05D000095 4.0e-15 85.1 96 46.9
Sopen07g006400 Solanum pennellii HOM05D000036 ORTHO05D000095 4.0e-15 85.1 101 49.5
MSTRG.10484 Avicennia marina HOM05D000036 ORTHO05D000095 5.3e-15 84.7 67 59.7
Thecc.09G068500 Theobroma cacao HOM05D000036 ORTHO05D000095 6.9e-15 84.3 93 47.3
Ciclev10007993m.g Citrus clementina HOM05D000036 ORTHO05D000095 9.0e-15 84.0 71 57.7
Sp7g30960 Schrenkiella parvula HOM05D000036 ORTHO05D000095 9.0e-15 84.0 71 56.3
Lj4g0015533 Lotus japonicus HOM05D000036 ORTHO05D000095 1.2e-14 83.6 103 45.6
CARHR241260 Cardamine hirsuta HOM05D000036 ORTHO05D000095 1.5e-14 83.2 71 54.9
HanXRQChr10g0319851 Helianthus annuus HOM05D000036 ORTHO05D000095 1.5e-14 83.2 67 58.2
Psat0s1781g0120 Pisum sativum HOM05D000036 ORTHO05D000095 1.5e-14 83.2 95 50.5
Dinv42437 Davidia involucrata HOM05D000036 ORTHO05D000095 2.0e-14 82.8 108 42.6
Duzib150G1315 Durio zibethinus HOM05D000036 ORTHO05D000095 2.0e-14 82.8 94 44.7
Gorai.001G018300 Gossypium raimondii HOM05D000036 ORTHO05D000095 2.0e-14 82.8 104 46.2
AT4G33220 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 2.6e-14 82.4 96 46.9
CAN.G1553.2 Capsicum annuum HOM05D000036 ORTHO05D000095 2.6e-14 82.4 98 46.9
Aa31sc386G20 Aethionema arabicum HOM05D000036 ORTHO05D016457 3.4e-14 82.0 73 52.1
Gohir.D07G017600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 3.4e-14 82.0 101 47.5
Manes.03G054300 Manihot esculenta HOM05D000036 ORTHO05D000095 3.4e-14 82.0 102 43.1
Phvul.003G126500 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 3.4e-14 82.0 94 48.9
BcaB03g12810 Brassica carinata HOM05D000036 ORTHO05D000095 4.5e-14 81.6 92 47.8
CSS0035457 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 4.5e-14 81.6 103 44.7
CSS0036537 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 4.5e-14 81.6 103 44.7
Duzib168G0496 Durio zibethinus HOM05D000036 ORTHO05D000095 4.5e-14 81.6 104 41.3
Gohir.A07G017800 Gossypium hirsutum HOM05D000036 ORTHO05D000095 4.5e-14 81.6 101 47.5
EL10Ac8g18956 Beta vulgaris HOM05D000036 ORTHO05D000095 5.8e-14 81.3 72 54.2
Carub.0007s0724 Capsella rubella HOM05D000036 ORTHO05D000095 5.8e-14 81.3 96 43.8
Medtr4g087970 Medicago truncatula HOM05D000036 ORTHO05D000095 5.8e-14 81.3 110 46.4
Potri.006G134500 Populus trichocarpa HOM05D000036 ORTHO05D000095 5.8e-14 81.3 108 41.7
PGR044G1560 Punica granatum HOM05D000036 ORTHO05D000095 5.8e-14 81.3 68 55.9
BcaC01g01001 Brassica carinata HOM05D000036 ORTHO05D000095 7.6e-14 80.9 92 47.8
BolC3t20972H Brassica oleracea HOM05D000036 ORTHO05D000095 7.6e-14 80.9 92 47.8
DCAR_011906 Daucus carota HOM05D000036 ORTHO05D000095 7.6e-14 80.9 90 50.0
A08p17730 Brassica napus HOM05D000036 ORTHO05D000095 9.9e-14 80.5 83 47.0
BraA08t33723Z Brassica rapa HOM05D000036 ORTHO05D000095 9.9e-14 80.5 92 46.7
Thhalv10024900m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 9.9e-14 80.5 71 54.9
FAN19G0660 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.3e-13 80.1 96 47.9
Sed0025927 Sechium edule HOM05D000036 ORTHO05D000095 1.3e-13 80.1 71 56.3
AL7G18340 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 1.7e-13 79.7 71 54.9
BcaC09g52133 Brassica carinata HOM05D000036 ORTHO05D016457 1.7e-13 79.7 73 53.4
C01p05410 Brassica napus HOM05D000036 ORTHO05D000095 1.7e-13 79.7 90 47.8
C03p86780 Brassica napus HOM05D000036 ORTHO05D000095 1.7e-13 79.7 92 46.7
BolC1t00521H Brassica oleracea HOM05D000036 ORTHO05D000095 1.7e-13 79.7 90 47.8
COL.COLO4_21186 Corchorus olitorius HOM05D000036 ORTHO05D000095 1.7e-13 79.7 73 50.7
A01p04960 Brassica napus HOM05D000036 ORTHO05D000095 2.2e-13 79.3 69 56.5
BraA01t00478Z Brassica rapa HOM05D000036 ORTHO05D000095 2.2e-13 79.3 69 56.5
Lsat_1_v5_gn_5_138261 Lactuca sativa HOM05D000036 ORTHO05D000095 2.2e-13 79.3 102 44.1
Manes.16G089100 Manihot esculenta HOM05D000036 ORTHO05D000095 2.2e-13 79.3 104 44.2
FAN28G1544 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.9e-13 79.0 96 46.9
VMungo1215G0029 Vigna mungo HOM05D000036 ORTHO05D000095 2.9e-13 79.0 92 46.7
ECA234G0766 Erigeron canadensis HOM05D000036 ORTHO05D000095 3.8e-13 78.6 69 53.6
Psat0s1781g0160 Pisum sativum HOM05D000036 ORTHO05D000095 3.8e-13 78.6 103 48.5
Actinidia33516 Actinidia chinensis HOM05D000036 ORTHO05D000095 4.9e-13 78.2 96 46.9
FvH4_1g09610 Fragaria vesca HOM05D000036 ORTHO05D000095 4.9e-13 78.2 96 46.9
FAN26G2413 Fragaria x ananassa HOM05D000036 ORTHO05D000095 4.9e-13 78.2 96 46.9
FAN26G2972 Fragaria x ananassa HOM05D000036 ORTHO05D000095 4.9e-13 78.2 96 46.9
AL5G21360 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 6.4e-13 77.8 99 45.5
SGA_v2.0_scaffold55G19864 Striga asiatica HOM05D000036 ORTHO05D000095 6.4e-13 77.8 69 52.2
ClCG10G000050 Citrullus lanatus HOM05D000036 ORTHO05D000095 8.4e-13 77.4 77 50.6
GSVIVG01023135001 Vitis vinifera HOM05D000036 ORTHO05D000095 8.4e-13 77.4 69 55.1
MELO3C013699.2 Cucumis melo HOM05D000036 ORTHO05D000095 1.4e-12 76.6 77 49.4
BcaC09g52134 Brassica carinata HOM05D000036 ORTHO05D000095 1.9e-12 76.3 68 55.9
TAR624G1370 Trochodendron aralioides HOM05D000036 ORTHO05D000095 1.9e-12 76.3 98 43.9
CsaV3_3G000050 Cucumis sativus L. HOM05D000036 ORTHO05D000095 2.4e-12 75.9 70 52.9
Hund08911 Selenicereus undatus HOM05D000036 ORTHO05D000095 3.2e-12 75.5 111 39.6
arahy.Tifrunner.gnm1.ann1.18DWCY Arachis hypogaea HOM05D000036 ORTHO05D000095 4.2e-12 75.1 106 48.1
BraA06t25346Z Brassica rapa HOM05D000036 ORTHO05D000095 4.2e-12 75.1 97 43.3
BolC3t19101H Brassica oleracea HOM05D000036 ORTHO05D000095 5.4e-12 74.7 95 42.1
Migut.L01602 Erythranthe guttata HOM05D000036 ORTHO05D000095 5.4e-12 74.7 97 47.4
arahy.Tifrunner.gnm1.ann1.GBY2EB Arachis hypogaea HOM05D000036 ORTHO05D000923 7.1e-12 74.3 106 48.1
Ciclev10017007m.g Citrus clementina HOM05D000036 ORTHO05D016457 7.1e-12 74.3 79 49.4
Medtr4g087980 Medicago truncatula HOM05D000036 ORTHO05D000095 7.1e-12 74.3 109 45.9
Atru.chr7.1794 Acer truncatum HOM05D000036 ORTHO05D000095 1.2e-11 73.6 97 44.3
AUR62028333 Chenopodium quinoa HOM05D000036 ORTHO05D000095 1.2e-11 73.6 74 50.0
BcaB01g01227 Brassica carinata HOM05D000036 ORTHO05D000095 1.6e-11 73.2 97 42.3
Cc00_g13760 Coffea canephora HOM05D000036 ORTHO05D000095 1.6e-11 73.2 71 53.5
Psat0s1781g0080 Pisum sativum HOM05D000036 ORTHO05D000095 1.6e-11 73.2 98 44.9
A06p22620 Brassica napus HOM05D000036 ORTHO05D000095 2.7e-11 72.4 95 43.2
Lj7C693T29 Lonicera japonica HOM05D000036 ORTHO05D000095 2.7e-11 72.4 74 51.4
Lalb_Chr08g0232911 Lupinus albus HOM05D000036 ORTHO05D000095 2.7e-11 72.4 76 50.0
CARHR054440 Cardamine hirsuta HOM05D000036 ORTHO05D000095 7.9e-11 70.9 96 38.5
arahy.Tifrunner.gnm1.ann1.1YW1H4 Arachis hypogaea HOM05D000036 ORTHO05D000095 1.0e-10 70.5 118 42.4
BcaC01g02103 Brassica carinata HOM05D000036 ORTHO05D000095 1.3e-10 70.1 72 44.4
Phvul.009G222300 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 1.3e-10 70.1 82 51.2
DCAR_028537 Daucus carota HOM05D000036 ORTHO05D000095 1.8e-10 69.7 70 51.4
TWI32G0294 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 2.3e-10 69.3 72 50.0
Aqoxy7G00929 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 3.0e-10 68.9 99 41.4
MSTRG.19421 Avicennia marina HOM05D000036 ORTHO05D000095 3.9e-10 68.6 99 41.4
AT3G43270 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 5.1e-10 68.2 97 39.2
arahy.Tifrunner.gnm1.ann1.541QKW Arachis hypogaea HOM05D000036 ORTHO05D000095 5.1e-10 68.2 118 41.5
Ah.14g084650 Amaranthus hybridus HOM05D000036 ORTHO05D000095 6.7e-10 67.8 72 50.0
Glyma.09G076600 Glycine max HOM05D000036 ORTHO05D000095 8.7e-10 67.4 98 48.0
Glyma.15G184300 Glycine max HOM05D000036 ORTHO05D000095 1.1e-09 67.0 95 48.4
Oeu004791.1 Olea europaea HOM05D000036 ORTHO05D000095 1.1e-09 67.0 93 41.9
Sc18g0002920 Simmondsia chinensis HOM05D000036 ORTHO05D000095 1.1e-09 67.0 98 39.8
Cc00_g13750 Coffea canephora HOM05D000036 ORTHO05D000095 1.9e-09 66.2 94 39.4
TWI63G0795 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 1.9e-09 66.2 67 50.7
DCAR_024787 Daucus carota HOM05D000036 ORTHO05D000095 2.5e-09 65.9 94 40.4
Lalb_Chr11g0073841 Lupinus albus HOM05D000036 ORTHO05D000095 2.5e-09 65.9 114 36.8
arahy.Tifrunner.gnm1.ann1.26ZA59 Arachis hypogaea HOM05D000036 ORTHO05D000095 4.3e-09 65.1 118 40.7
Sp5g17880 Schrenkiella parvula HOM05D000036 ORTHO05D000095 4.3e-09 65.1 106 35.8
Ah.09g228860 Amaranthus hybridus HOM05D000036 ORTHO05D000095 5.6e-09 64.7 70 50.0
Carub.0005s0914 Capsella rubella HOM05D000036 ORTHO05D000095 7.4e-09 64.3 92 37.0
Lalb_Chr11g0073901 Lupinus albus HOM05D000036 ORTHO05D016457 7.4e-09 64.3 85 37.6
Thhalv10002482m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 9.6e-09 63.9 78 39.7
SalBow6G1085 Salvia bowleyana HOM05D000036 ORTHO05D000095 9.6e-09 63.9 93 41.9
Os08g0450100 Oryza sativa ssp. japonica HOM05D000036 ORTHO05D000095 1.6e-08 63.2 59 52.5
Lalb_Chr11g0073881 Lupinus albus HOM05D000036 ORTHO05D016457 2.8e-08 62.4 109 33.9
Oeu055316.1 Olea europaea HOM05D000036 ORTHO05D000095 4.8e-08 61.6 98 40.8
VMungo1309G3093 Vigna mungo HOM05D000036 ORTHO05D000095 4.8e-08 61.6 100 41.0
CDE06G0093 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 6.2e-08 61.2 62 48.4
THA.LOC104815068 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 6.2e-08 61.2 71 42.3
HanXRQChr12g0354221 Helianthus annuus HOM05D000036 ORTHO05D000095 1.1e-07 60.5 57 49.1
Aa31LG4G12940 Aethionema arabicum HOM05D000036 ORTHO05D000095 1.4e-07 60.1 98 35.7
PSO135G0213 Papaver somniferum HOM05D000036 ORTHO05D000095 1.4e-07 60.1 64 46.9
THA.LOC104799603 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 1.4e-07 60.1 71 43.7
Zm00001eb177120 Zea mays HOM05D000036 ORTHO05D000095 1.4e-07 60.1 65 46.2
Lalb_Chr11g0073831 Lupinus albus HOM05D000036 ORTHO05D000095 2.4e-07 59.3 117 35.9
TPR.G12588 Trifolium pratense HOM05D000036 ORTHO05D005689 2.4e-07 59.3 75 42.7
HPP92_010941 Vanilla planifolia HOM05D000036 ORTHO05D000095 2.4e-07 59.3 58 50.0
PGR142G3119 Punica granatum HOM05D000036 ORTHO05D000095 3.1e-07 58.9 71 45.1
PSO724G1283 Papaver somniferum HOM05D000036 ORTHO05D000095 4.0e-07 58.5 64 45.3
Ca_02299_v3 Cicer arietinum L. HOM05D000036 ORTHO05D028849 9.0e-07 57.4 74 50.0
Aqoxy7G04187 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 1.2e-06 57.0 71 40.8
unitig_578.g16401 Utricularia gibba HOM05D000036 ORTHO05D000095 2.6e-06 55.8 64 45.3
Ca_02298_v3 Cicer arietinum L. HOM05D000036 ORTHO05D028849 3.4e-06 55.5 74 48.6
CDE07G1988 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 1.0e-05 53.9 100 35.0


User provided reference genes

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