Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13887_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 2.4e-60 235.3 120 100.0
Ca_20701_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 2.4e-60 235.3 120 100.0
Medtr4g101130 Medicago truncatula HOM05D003577 ORTHO05D004663 5.0e-34 147.9 88 81.8
arahy.Tifrunner.gnm1.ann1.5G087V Arachis hypogaea HOM05D003577 ORTHO05D004663 2.5e-33 145.6 89 79.8
arahy.Tifrunner.gnm1.ann1.BE9V1M Arachis hypogaea HOM05D003577 ORTHO05D004663 2.5e-33 145.6 89 79.8
Psat4g070040 Pisum sativum HOM05D003577 ORTHO05D004663 5.5e-33 144.4 89 80.9
Medtr5g012390 Medicago truncatula HOM05D003577 ORTHO05D004663 9.4e-33 143.7 88 79.5
Aqoxy5G03916 Aquilegia oxysepala HOM05D003577 ORTHO05D004663 1.6e-32 142.9 89 74.2
PSO782G2886 Papaver somniferum HOM05D003577 ORTHO05D004663 2.1e-32 142.5 88 76.1
Lj4g0018948 Lotus japonicus HOM05D003577 ORTHO05D004663 2.7e-32 142.1 89 77.5
Psat6g166680 Pisum sativum HOM05D003577 ORTHO05D004663 2.7e-32 142.1 87 80.5
QL12p012756 Quercus lobata HOM05D003577 ORTHO05D004663 3.6e-32 141.7 112 66.1
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 3.6e-32 141.7 97 79.4
TAR375G0076 Trochodendron aralioides HOM05D003577 ORTHO05D004663 3.6e-32 141.7 88 78.4
FAN04G1063 Fragaria x ananassa HOM05D003577 ORTHO05D004663 4.7e-32 141.4 88 76.1
FAN08G3105 Fragaria x ananassa HOM05D003577 ORTHO05D004663 6.1e-32 141.0 88 75.0
Glyma.01G210400 Glycine max HOM05D003577 ORTHO05D004663 6.1e-32 141.0 88 77.3
Phvul.002G062000 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 6.1e-32 141.0 88 77.3
RcHm_v2.0_Chr7g0202841 Rosa chinensis HOM05D003577 ORTHO05D004663 6.1e-32 141.0 88 75.0
Ca_24570_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 8.0e-32 140.6 88 78.4
Potri.003G111201 Populus trichocarpa HOM05D003577 ORTHO05D004663 8.0e-32 140.6 89 75.3
Potri.008G135920 Populus trichocarpa HOM05D003577 ORTHO05D004663 8.0e-32 140.6 89 75.3
Sabra03G0077100 Salix brachista HOM05D003577 ORTHO05D004663 8.0e-32 140.6 89 75.3
Glyma.05G058100 Glycine max HOM05D003577 ORTHO05D004663 1.0e-31 140.2 89 76.4
CiPaw.12G108500 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.4e-31 139.8 88 75.0
Nn6g34004 Nelumbo nucifera HOM05D003577 ORTHO05D004663 1.4e-31 139.8 88 75.0
Sed0005868 Sechium edule HOM05D003577 ORTHO05D004663 1.4e-31 139.8 89 74.2
Glyma.17G140600 Glycine max HOM05D003577 ORTHO05D004663 1.8e-31 139.4 88 75.0
QL12p012789 Quercus lobata HOM05D003577 ORTHO05D004663 1.8e-31 139.4 88 76.1
VMungo1215G0981 Vigna mungo HOM05D003577 ORTHO05D004663 1.8e-31 139.4 88 76.1
FAN18G1797 Fragaria x ananassa HOM05D003577 ORTHO05D004663 2.3e-31 139.0 88 75.0
Nitab4.5_0000312g0260 Nicotiana tabacum HOM05D003577 ORTHO05D004663 2.3e-31 139.0 88 73.9
Potri.001G122400 Populus trichocarpa HOM05D003577 ORTHO05D004663 2.3e-31 139.0 89 74.2
CANSAT21G0247 Cannabis sativa HOM05D003577 ORTHO05D004663 3.0e-31 138.7 88 75.0
AUR62007499 Chenopodium quinoa HOM05D003577 ORTHO05D004663 3.0e-31 138.7 89 75.3
AUR62039952 Chenopodium quinoa HOM05D003577 ORTHO05D004663 3.0e-31 138.7 89 75.3
MELO3C005539.2 Cucumis melo HOM05D003577 ORTHO05D004663 3.0e-31 138.7 89 73.0
Dinv39124 Davidia involucrata HOM05D003577 ORTHO05D004663 3.0e-31 138.7 89 75.3
Phvul.003G219400 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 3.0e-31 138.7 89 74.2
QL12p012793 Quercus lobata HOM05D003577 ORTHO05D004663 3.0e-31 138.7 88 75.0
CSS0016480 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 3.9e-31 138.3 88 73.9
CSS0037300 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 3.9e-31 138.3 88 73.9
ClCG01G003970 Citrullus lanatus HOM05D003577 ORTHO05D004663 3.9e-31 138.3 89 73.0
CsaV3_5G004150 Cucumis sativus L. HOM05D003577 ORTHO05D004663 3.9e-31 138.3 89 74.2
Eucgr.E00444 Eucalyptus grandis HOM05D003577 ORTHO05D004663 3.9e-31 138.3 88 72.7
RcHm_v2.0_Chr4g0445541 Rosa chinensis HOM05D003577 ORTHO05D004663 3.9e-31 138.3 88 75.0
GSVIVG01001303001 Vitis vinifera HOM05D003577 ORTHO05D004663 3.9e-31 138.3 89 71.9
Cpa.g.sc29.108 Carica papaya HOM05D003577 ORTHO05D004663 5.2e-31 137.9 88 76.1
FvH4_5g00090 Fragaria vesca HOM05D003577 ORTHO05D004663 5.2e-31 137.9 88 73.9
Sopen08g027320 Solanum pennellii HOM05D003577 ORTHO05D004663 5.2e-31 137.9 88 73.9
TAR263G0002 Trochodendron aralioides HOM05D003577 ORTHO05D004663 5.2e-31 137.9 89 74.2
EL10Ac5g13048 Beta vulgaris HOM05D003577 ORTHO05D004663 6.7e-31 137.5 88 73.9
Duzib205G2002 Durio zibethinus HOM05D003577 ORTHO05D004663 6.7e-31 137.5 88 75.0
Nitab4.5_0012654g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 6.7e-31 137.5 83 78.3
Psat4g070120 Pisum sativum HOM05D003577 ORTHO05D004663 6.7e-31 137.5 89 76.4
PGSC0003DMG400004800 Solanum tuberosum HOM05D003577 ORTHO05D004663 6.7e-31 137.5 88 73.9
VMungo0251G3133 Vigna mungo HOM05D003577 ORTHO05D004663 6.7e-31 137.5 88 75.0
DCAR_006822 Daucus carota HOM05D003577 ORTHO05D004663 8.8e-31 137.1 88 73.9
Prupe.5G072700 Prunus persica HOM05D003577 ORTHO05D004663 8.8e-31 137.1 88 71.6
Solyc08g078850.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 8.8e-31 137.1 88 72.7
Atru.chr9.1341 Acer truncatum HOM05D003577 ORTHO05D004663 1.1e-30 136.7 89 71.9
CSS0040266 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 1.1e-30 136.7 88 71.6
Migut.A00960 Erythranthe guttata HOM05D003577 ORTHO05D004663 1.1e-30 136.7 88 70.5
MD16G1010900 Malus domestica HOM05D003577 ORTHO05D004663 1.1e-30 136.7 88 73.9
SEGI_40617 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 1.1e-30 136.7 88 69.3
Sc22g0000780 Simmondsia chinensis HOM05D003577 ORTHO05D004663 1.1e-30 136.7 89 71.9
Gohir.A08G171900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 73.9
Gohir.A12G219850 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 72.7
Gohir.D08G190300 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 73.9
Gohir.D12G222000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 72.7
Gorai.008G238000 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 72.7
Gorai.009G297700 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 73.9
Manes.02G038200 Manihot esculenta HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 73.9
PGR042G0879 Punica granatum HOM05D003577 ORTHO05D004663 1.5e-30 136.3 88 71.6
Actinidia02117 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.0e-30 136.0 88 73.9
Ah.12g056680 Amaranthus hybridus HOM05D003577 ORTHO05D004663 2.0e-30 136.0 89 70.8
Cc08_g12710 Coffea canephora HOM05D003577 ORTHO05D004663 2.0e-30 136.0 87 75.9
Lj2C215G3 Lonicera japonica HOM05D003577 ORTHO05D004663 2.0e-30 136.0 88 71.6
Manes.01G079100 Manihot esculenta HOM05D003577 ORTHO05D004663 2.0e-30 136.0 88 73.9
Hund11614 Selenicereus undatus HOM05D003577 ORTHO05D004663 2.0e-30 136.0 88 73.9
Actinidia14440 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.6e-30 135.6 88 72.7
CAN.G1218.7 Capsicum annuum HOM05D003577 ORTHO05D004663 2.6e-30 135.6 88 70.5
Ciclev10020910m.g Citrus clementina HOM05D003577 ORTHO05D004663 2.6e-30 135.6 89 71.9
Haze_07878 Corylus avellana HOM05D003577 ORTHO05D004663 2.6e-30 135.6 87 74.7
DCAR_027785 Daucus carota HOM05D003577 ORTHO05D004663 2.6e-30 135.6 88 72.7
Oeu062976.1 Olea europaea HOM05D003577 ORTHO05D004663 2.6e-30 135.6 85 76.5
Sabra01G0094200 Salix brachista HOM05D003577 ORTHO05D004663 2.6e-30 135.6 88 73.9
Thecc.03G254200 Theobroma cacao HOM05D003577 ORTHO05D004663 2.6e-30 135.6 88 72.7
Cfa012750 Carpinus fangiana HOM05D003577 ORTHO05D004663 3.3e-30 135.2 87 74.7
CDE12G0646 Ceratophyllum demersum HOM05D003577 ORTHO05D004663 3.3e-30 135.2 88 75.0
Nitab4.5_0006367g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 3.3e-30 135.2 88 71.6
Peaxi162Scf00002g01511 Petunia axillaris HOM05D003577 ORTHO05D004663 3.3e-30 135.2 88 71.6
Prupe.1G339800 Prunus persica HOM05D003577 ORTHO05D004663 3.3e-30 135.2 88 71.6
Ah.02g116790 Amaranthus hybridus HOM05D003577 ORTHO05D004663 4.4e-30 134.8 88 71.6
Lalb_Chr05g0225731 Lupinus albus HOM05D003577 ORTHO05D004663 4.4e-30 134.8 89 70.8
MBI04_g03669_MAGBIO Magnolia biondii HOM05D003577 ORTHO05D004663 4.4e-30 134.8 89 70.8
SalBow6G4668 Salvia bowleyana HOM05D003577 ORTHO05D004663 4.4e-30 134.8 88 69.3
SEGI_41296 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 4.4e-30 134.8 88 68.2
Solyc08g007420.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 4.4e-30 134.8 88 71.6
Sopen08g003370 Solanum pennellii HOM05D003577 ORTHO05D004663 4.4e-30 134.8 88 71.6
PGSC0003DMG400012478 Solanum tuberosum HOM05D003577 ORTHO05D004663 4.4e-30 134.8 88 71.6
MSTRG.12085 Avicennia marina HOM05D003577 ORTHO05D004663 5.7e-30 134.4 88 68.2
Atru.chr9.1342 Acer truncatum HOM05D003577 ORTHO05D004663 7.4e-30 134.0 89 69.7
Lsat_1_v5_gn_6_3021 Lactuca sativa HOM05D003577 ORTHO05D004663 7.4e-30 134.0 88 73.9
SGA_v2.0_scaffold146G36158 Striga asiatica HOM05D003577 ORTHO05D004663 7.4e-30 134.0 88 69.3
THA.LOC104813333 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 7.4e-30 134.0 88 72.7
vmacro14092 Vaccinium macrocarpon HOM05D003577 ORTHO05D004663 7.4e-30 134.0 88 72.7
CAN.G1227.9 Capsicum annuum HOM05D003577 ORTHO05D004663 9.7e-30 133.7 88 70.5
Peaxi162Scf00102g01136 Petunia axillaris HOM05D003577 ORTHO05D004663 9.7e-30 133.7 88 69.3
SEGI_37574 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 9.7e-30 133.7 88 67.0
TWI15G1033 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 9.7e-30 133.7 88 70.5
Eucgr.D02046 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.3e-29 133.3 88 69.3
Hma1.2p1_0753F.1_g212980 Hydrangea macrophylla HOM05D003577 ORTHO05D004663 1.3e-29 133.3 88 71.6
TWI15G0060 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 1.3e-29 133.3 88 69.3
BcaNung00105 Brassica carinata HOM05D003577 ORTHO05D004663 1.7e-29 132.9 88 71.6
A01p20100 Brassica napus HOM05D003577 ORTHO05D004663 1.7e-29 132.9 88 70.5
BraA01t01934Z Brassica rapa HOM05D003577 ORTHO05D004663 1.7e-29 132.9 88 70.5
CiPaw.11G152300 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.7e-29 132.9 87 72.4
Duzib084G0825 Durio zibethinus HOM05D003577 ORTHO05D004663 1.7e-29 132.9 88 71.6
CANSAT21G2077 Cannabis sativa HOM05D003577 ORTHO05D004663 2.2e-29 132.5 87 73.6
Thhalv10025596m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 2.2e-29 132.5 88 72.7
Nitab4.5_0004059g0040 Nicotiana tabacum HOM05D003577 ORTHO05D004663 2.2e-29 132.5 87 71.3
ECA233G5538 Erigeron canadensis HOM05D003577 ORTHO05D004663 2.8e-29 132.1 88 70.5
SEGI_01079 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.8e-29 132.1 88 70.5
AL7G37440 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 3.7e-29 131.7 88 70.5
Carub.0007s2413 Capsella rubella HOM05D003577 ORTHO05D004663 3.7e-29 131.7 88 71.6
CARHR223890 Cardamine hirsuta HOM05D003577 ORTHO05D004663 3.7e-29 131.7 88 71.6
Gohir.D03G162000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 3.7e-29 131.7 88 70.5
Gorai.003G170500 Gossypium raimondii HOM05D003577 ORTHO05D004663 3.7e-29 131.7 88 70.5
Sp7g16910 Schrenkiella parvula HOM05D003577 ORTHO05D004663 3.7e-29 131.7 88 71.6
BcaNung03469 Brassica carinata HOM05D003577 ORTHO05D004663 4.8e-29 131.3 88 71.6
C07p48690 Brassica napus HOM05D003577 ORTHO05D004663 4.8e-29 131.3 85 74.1
BraA03t14127Z Brassica rapa HOM05D003577 ORTHO05D004663 4.8e-29 131.3 88 71.6
HanXRQChr13g0396351 Helianthus annuus HOM05D003577 ORTHO05D004663 4.8e-29 131.3 88 69.3
Os02g0105400 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 4.8e-29 131.3 88 69.3
AT4G17260 Arabidopsis thaliana HOM05D003577 ORTHO05D004663 6.3e-29 131.0 88 70.5
BcaC09g50459 Brassica carinata HOM05D003577 ORTHO05D004663 6.3e-29 131.0 88 70.5
C01p25250 Brassica napus HOM05D003577 ORTHO05D004663 6.3e-29 131.0 88 70.5
BolC1t02475H Brassica oleracea HOM05D003577 ORTHO05D004663 6.3e-29 131.0 88 70.5
Cc08_g12720 Coffea canephora HOM05D003577 ORTHO05D004663 6.3e-29 131.0 91 70.3
Gohir.A03G008900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 6.3e-29 131.0 88 70.5
PGR031G3899 Punica granatum HOM05D003577 ORTHO05D004663 6.3e-29 131.0 88 69.3
Aa31LG6G2900 Aethionema arabicum HOM05D003577 ORTHO05D004663 8.2e-29 130.6 88 70.5
BcaC06g33546 Brassica carinata HOM05D003577 ORTHO05D004663 8.2e-29 130.6 88 70.5
BolC7t45376H Brassica oleracea HOM05D003577 ORTHO05D004663 8.2e-29 130.6 88 70.5
unitig_0.g1064 Utricularia gibba HOM05D003577 ORTHO05D004663 1.4e-28 129.8 88 68.2
Lsat_1_v5_gn_3_740 Lactuca sativa HOM05D003577 ORTHO05D004663 1.8e-28 129.4 88 72.7
Nn6g34005 Nelumbo nucifera HOM05D003577 ORTHO05D004663 1.8e-28 129.4 88 68.2
SalBow6G1855 Salvia bowleyana HOM05D003577 ORTHO05D004663 1.8e-28 129.4 88 65.9
HanXRQChr06g0164341 Helianthus annuus HOM05D003577 ORTHO05D004663 3.1e-28 128.6 88 70.5
unitig_0.g1061 Utricularia gibba HOM05D003577 ORTHO05D004663 3.1e-28 128.6 88 67.0
Thhalv10025435m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 5.3e-28 127.9 88 70.5
HanXRQChr17g0549811 Helianthus annuus HOM05D003577 ORTHO05D004663 5.3e-28 127.9 88 69.3
GSVIVG01027640001 Vitis vinifera HOM05D003577 ORTHO05D004663 5.3e-28 127.9 89 69.7
Os06g0104900 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 1.6e-27 126.3 88 67.0
RcHm_v2.0_Chr4g0406091 Rosa chinensis HOM05D003577 ORTHO05D004663 2.0e-27 125.9 85 70.6
Zm00001eb229430 Zea mays HOM05D003577 ORTHO05D004663 7.7e-27 124.0 88 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3813 Anthoceros agrestis HOM05D003577 ORTHO05D004663 2.5e-25 119.0 88 62.5
Zm00001eb229440 Zea mays HOM05D003577 ORTHO05D004663 2.5e-25 119.0 88 62.5
Pp3c21_11360 Physcomitrium patens HOM05D003577 ORTHO05D004663 4.2e-25 118.2 88 62.5
Pp3c22_12920 Physcomitrium patens HOM05D003577 ORTHO05D004663 5.5e-25 117.9 88 63.6
Pp3c18_10120 Physcomitrium patens HOM05D003577 ORTHO05D004663 2.1e-24 115.9 88 59.1
TPR.G25882 Trifolium pratense HOM05D003577 ORTHO05D004663 2.1e-24 115.9 69 79.7
CBR_g24220 Chara braunii HOM05D003577 ORTHO05D004663 3.6e-24 115.2 88 60.2
SEGI_18702 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 6.1e-24 114.4 88 60.2
ATR0681G358 Amborella trichopoda HOM05D003577 ORTHO05D004663 1.8e-23 112.8 87 59.8
Mapoly0049s0082 Marchantia polymorpha HOM05D003577 ORTHO05D004663 8.8e-23 110.5 88 53.4
THA.LOC104798465 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 5.7e-22 107.8 70 71.4
SMO116G0389 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 2.8e-21 105.5 87 54.0
CAN.G1227.7 Capsicum annuum HOM05D003577 ORTHO05D004663 1.6e-19 99.8 71 64.8
SMO356G0074 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.7e-18 96.3 90 51.1
AL5G17860 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 3.8e-18 95.1 98 54.1
Lj2g0000249 Lotus japonicus HOM05D003577 ORTHO05D004663 9.4e-17 90.5 66 69.7
FAN25G2773 Fragaria x ananassa HOM05D003577 ORTHO05D025039 3.4e-14 82.0 82 53.7
LjContig00155g0022757 Lotus japonicus HOM05D003577 ORTHO05D004663 5.9e-11 71.2 47 72.3
Ca_22502_v3 Cicer arietinum L. HOM05D003577 ORTHO05D025039 2.8e-08 62.4 45 75.6
Ca_29568_v3 Cicer arietinum L. HOM05D003577 ORTHO05D025039 2.8e-08 62.4 45 75.6


User provided reference genes

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