Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.9e-266 921.4 488 100.0
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.3e-117 426.8 468 59.6
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 7.3e-116 421.8 448 59.6
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 1.1e-108 397.9 496 52.2
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 4.6e-94 349.4 442 54.1
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 6.9e-90 335.5 442 50.2
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.3e-88 331.3 440 49.3
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.0e-77 295.0 435 49.4
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 3.3e-76 290.0 442 46.4
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.2e-73 281.6 440 44.3
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 4.5e-73 279.6 440 48.6
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.4e-71 274.6 442 44.3
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.4e-71 274.6 444 43.9
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.9e-71 274.2 441 44.4
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-70 271.2 442 45.0
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 4.6e-70 269.6 441 45.1
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 6.0e-70 269.2 442 44.3
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 1.0e-69 268.5 405 44.7
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 6.7e-69 265.8 442 44.8
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 1.5e-68 264.6 455 42.6
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 4.3e-68 263.1 464 43.1
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 2.3e-61 240.7 439 41.2
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.1e-59 234.2 458 39.5
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 7.9e-54 215.7 370 41.9
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 2.5e-47 194.1 461 36.4
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 9.4e-47 192.2 519 32.8
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 7.4e-44 182.6 401 39.4
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 7.4e-44 182.6 457 36.1
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 3.7e-43 180.3 460 35.4
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 3.7e-43 180.3 462 37.2
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 6.3e-43 179.5 462 36.6
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 8.2e-43 179.1 451 37.0
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 4.1e-42 176.8 460 37.4
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.5e-41 173.3 456 35.3
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.0e-40 172.2 454 37.9
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 2.2e-40 171.0 470 35.1
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 2.2e-40 171.0 385 37.1
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 2.9e-40 170.6 396 37.9
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.9e-40 170.6 451 36.4
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 2.9e-40 170.6 461 36.4
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 6.5e-40 169.5 461 33.6
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.1e-39 168.7 468 36.3
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.1e-39 168.7 454 37.2
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.1e-39 168.7 462 35.3
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.4e-39 168.3 456 36.6
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 9.4e-39 165.6 457 33.0
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.6e-38 164.9 451 34.1
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.1e-38 162.9 451 33.0
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.4e-37 161.8 395 37.5
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 3.9e-37 160.2 455 34.1
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.2e-37 159.8 440 37.5
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.8e-37 159.1 438 36.5
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.5e-36 158.3 463 36.1
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.4e-36 156.8 437 35.7
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 9.7e-36 155.6 433 35.8
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.3e-35 155.2 393 34.6
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 2.8e-35 154.1 503 32.0
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 4.8e-35 153.3 462 33.3
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 4.8e-35 153.3 463 34.3
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-34 152.1 437 35.5
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.0e-34 149.4 443 34.3
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 9.1e-34 149.1 460 32.8
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 9.1e-34 149.1 433 35.6
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.0e-33 147.9 486 33.1
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 2.9e-32 144.1 457 31.9
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.0e-32 143.3 445 33.3
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.1e-31 142.1 400 32.8
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 1.2e-30 138.7 452 30.3
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.0e-29 135.6 458 34.1
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.5e-28 131.7 441 33.8
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.5e-28 131.7 467 35.1
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 4.4e-28 130.2 466 34.3
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 4.8e-27 126.7 449 32.3
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.4e-26 125.2 475 34.7
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.4e-26 125.2 404 34.4
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.8e-26 124.8 336 37.5
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.1e-26 124.0 461 31.5
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.3e-26 123.2 305 38.7
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 5.3e-26 123.2 452 31.4
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 7.0e-26 122.9 381 33.3
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 9.1e-26 122.5 428 34.1
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 5.9e-25 119.8 372 33.9
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.9e-25 119.8 461 31.7
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 5.9e-25 119.8 455 34.5
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 7.7e-25 119.4 439 31.7
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.0e-24 119.0 456 30.5
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.9e-24 117.5 452 31.9
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.8e-24 117.1 420 29.3
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 3.8e-24 117.1 452 30.3
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 8.5e-24 115.9 471 33.3
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 1.1e-23 115.5 457 29.5
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.5e-23 113.2 445 31.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 7.2e-23 112.8 444 30.0
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 3.6e-22 110.5 451 29.5
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 6.1e-22 109.8 454 30.4
Ca_26749_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 1.4e-21 108.6 60 95.0
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 1.8e-21 108.2 60 91.7
Ca_13871_v3 Cicer arietinum L. HOM05D012018 ORTHO05D000047 3.0e-21 107.5 59 91.5
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 6.8e-21 106.3 432 30.6
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 8.8e-21 105.9 121 62.0
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.4e-20 104.0 439 31.0
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 3.4e-20 104.0 437 31.6
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.4e-20 103.6 457 30.4
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.3e-19 102.1 449 28.3
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.3e-19 102.1 411 29.4
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.7e-19 101.7 369 33.6
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.7e-19 101.7 430 27.9
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.8e-19 100.9 403 28.5
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 3.7e-19 100.5 369 34.4
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 2.7e-17 94.4 394 30.5
Ca_24124_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000047 4.5e-17 93.6 46 97.8
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 1.0e-16 92.4 421 25.9
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.7e-16 91.7 447 30.2
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.3e-16 91.3 386 30.3
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 8.6e-16 89.4 459 27.5
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.9e-15 88.2 478 24.9
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 3.2e-15 87.4 376 31.1
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 3.2e-15 87.4 457 28.0
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.2e-15 86.3 461 29.1
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.8e-14 84.3 370 30.3
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.0e-13 82.4 374 28.1
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 3.0e-13 80.9 369 28.2
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 4.0e-13 80.5 406 27.1
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.2e-12 79.0 380 31.3
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.0e-12 78.2 368 31.5
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 2.0e-12 78.2 376 30.9
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 4.4e-12 77.0 267 30.3
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.8e-11 74.3 376 30.3
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 6.3e-11 73.2 518 26.8
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.8e-10 71.6 397 28.2
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 9.2e-10 69.3 376 28.7
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 1.6e-09 68.6 368 27.2
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.6e-09 68.6 371 29.6
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 2.7e-09 67.8 364 28.0
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 3.5e-09 67.4 364 28.8
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 5.9e-09 66.6 449 28.1
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.3e-08 65.5 375 28.5
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.3e-08 65.5 372 29.3
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 1.3e-08 65.5 391 25.8
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 1.7e-08 65.1 127 42.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.7e-08 65.1 432 25.7
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.9e-08 64.3 167 39.5
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 6.6e-08 63.2 375 26.4
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 8.6e-08 62.8 42 83.3
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 8.6e-08 62.8 42 83.3
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.6e-08 62.8 71 56.3
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.1e-07 62.4 38 84.2
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.5e-07 62.0 73 53.4
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.9e-07 61.6 375 30.4
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 2.8e-06 57.8 241 28.2
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 2.8e-06 57.8 103 40.8
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 4.7e-06 57.0 42 71.4
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.1e-06 56.6 110 42.7
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 8.0e-06 56.2 455 26.6


User provided reference genes

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