Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13861_v3 Cicer arietinum L. HOM05D002031 ORTHO05D003557 6.2e-222 773.9 400 100.0
Ca_21034_v3 Cicer arietinum L. HOM05D002031 ORTHO05D003557 9.7e-50 201.8 288 48.3
Ca_06069_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.7e-33 147.9 503 29.8
Ca_03002_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.1e-32 145.2 452 31.2
Ca_14361_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 5.0e-30 136.3 221 44.8
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 2.5e-29 134.0 467 30.4
Ca_11778_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 3.2e-29 133.7 480 30.8
Ca_26778_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.2e-26 125.2 428 32.7
Ca_23665_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.6e-26 124.0 78 82.1
Ca_23033_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.8e-25 120.6 133 54.1
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 4.1e-24 116.7 155 50.3
Ca_15076_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.1e-24 116.7 133 53.4
Ca_14589_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.5e-21 108.2 73 76.7
Ca_22709_v3 Cicer arietinum L. HOM05D002031 ORTHO05D002143 4.2e-21 106.7 126 55.6
Psat2g083720 Pisum sativum HOM05D002031 ORTHO05D002143 7.2e-21 105.9 126 54.8
Ca_23029_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 9.5e-21 105.5 279 36.6
Ca_23031_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 9.5e-21 105.5 279 36.6
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.6e-20 104.8 368 30.4
Ca_26148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.4e-19 101.7 277 35.0
Medtr5g032140 Medicago truncatula HOM05D002031 ORTHO05D002143 1.4e-19 101.7 126 53.2
VMungo1383G2561 Vigna mungo HOM05D002031 ORTHO05D002143 4.4e-18 96.7 115 52.2
Phvul.001G220900 Phaseolus vulgaris HOM05D002031 ORTHO05D002143 9.8e-18 95.5 126 50.0
arahy.Tifrunner.gnm1.ann1.6G4FCY Arachis hypogaea HOM05D002031 ORTHO05D002143 2.2e-17 94.4 115 52.2
arahy.Tifrunner.gnm1.ann1.4T2FL2 Arachis hypogaea HOM05D002031 ORTHO05D002143 4.9e-17 93.2 115 51.3
arahy.Tifrunner.gnm1.ann1.JQUJ9N Arachis hypogaea HOM05D002031 ORTHO05D002143 6.3e-17 92.8 126 48.4
arahy.Tifrunner.gnm1.ann1.T9IDSP Arachis hypogaea HOM05D002031 ORTHO05D002143 6.3e-17 92.8 126 48.4
Lalb_Chr16g0385451 Lupinus albus HOM05D002031 ORTHO05D002143 6.3e-17 92.8 126 49.2
Glyma.19G224000 Glycine max HOM05D002031 ORTHO05D002143 8.3e-17 92.4 126 48.4
Ca_02970_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.1e-16 92.0 86 60.5
Ca_22854_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.8e-16 91.3 85 62.4
Ca_27854_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.8e-16 91.3 278 32.7
Ca_05379_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.4e-16 90.9 119 50.4
Ca_27198_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 5.4e-16 89.7 396 29.3
Lj1g0008760 Lotus japonicus HOM05D002031 ORTHO05D002143 5.4e-16 89.7 126 46.8
Glyma.03G227100 Glycine max HOM05D002031 ORTHO05D002143 7.0e-16 89.4 126 46.8
Ca_27381_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 9.2e-16 89.0 153 43.8
Ca_28064_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.2e-15 88.6 70 72.9
Ca_05418_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.5e-15 87.0 84 60.7
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 4.5e-15 86.7 150 41.3
Ca_22242_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.0e-14 85.5 76 63.2
Ca_02573_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 1.3e-14 85.1 277 31.4
Ca_11726_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.6e-14 82.8 180 36.7
FvH4_5g26110 Fragaria vesca HOM05D002031 ORTHO05D002143 6.6e-14 82.8 127 44.9
FvH4_5g03810 Fragaria vesca HOM05D002031 ORTHO05D002143 8.6e-14 82.4 127 44.9
FAN13G0607 Fragaria x ananassa HOM05D002031 ORTHO05D002143 8.6e-14 82.4 127 44.9
FAN13G1744 Fragaria x ananassa HOM05D002031 ORTHO05D002143 8.6e-14 82.4 127 44.9
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 8.6e-14 82.4 125 45.6
RcHm_v2.0_Chr1g0329761 Rosa chinensis HOM05D002031 ORTHO05D002143 8.6e-14 82.4 127 44.1
vmacro07734 Vaccinium macrocarpon HOM05D002031 ORTHO05D002143 8.6e-14 82.4 116 48.3
Ca_27970_v3 Cicer arietinum L. HOM05D001980 ORTHO05D000001 1.1e-13 82.0 207 37.2
FAN08G0699 Fragaria x ananassa HOM05D002031 ORTHO05D002143 1.5e-13 81.6 127 44.1
FAN13G2640 Fragaria x ananassa HOM05D002031 ORTHO05D002143 1.5e-13 81.6 127 44.1
Ca_02902_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.5e-13 80.9 89 57.3
FAN18G4425 Fragaria x ananassa HOM05D002031 ORTHO05D002143 2.5e-13 80.9 177 37.9
RcHm_v2.0_Chr7g0195701 Rosa chinensis HOM05D002031 ORTHO05D002143 4.3e-13 80.1 177 36.7
FAN18G3253 Fragaria x ananassa HOM05D002031 ORTHO05D002143 5.6e-13 79.7 127 44.1
Ciclev10000440m.g Citrus clementina HOM05D002031 ORTHO05D002143 7.3e-13 79.3 117 47.0
Sed0025340 Sechium edule HOM05D002031 ORTHO05D002143 7.3e-13 79.3 128 44.5
Actinidia07331 Actinidia chinensis HOM05D002031 ORTHO05D002143 1.2e-12 78.6 127 43.3
ClCG07G014810 Citrullus lanatus HOM05D002031 ORTHO05D002143 1.2e-12 78.6 127 44.1
Eucgr.D01778 Eucalyptus grandis HOM05D002031 ORTHO05D002143 1.2e-12 78.6 127 43.3
FAN08G2579 Fragaria x ananassa HOM05D002031 ORTHO05D002143 1.2e-12 78.6 238 33.6
MD06G1099300 Malus domestica HOM05D002031 ORTHO05D002143 1.2e-12 78.6 127 41.7
Duzib068G0029 Durio zibethinus HOM05D002031 ORTHO05D002143 1.6e-12 78.2 128 44.5
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.6e-12 78.2 140 44.3
GSVIVG01031142001 Vitis vinifera HOM05D002031 ORTHO05D002143 1.6e-12 78.2 127 44.9
Ca_27230_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.1e-12 77.8 88 54.5
Ca_26248_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.8e-12 77.4 273 30.4
Manes.02G013600 Manihot esculenta HOM05D002031 ORTHO05D002143 2.8e-12 77.4 127 44.9
Cpa.g.sc1603.1 Carica papaya HOM05D002031 ORTHO05D002143 3.6e-12 77.0 128 43.8
Haze_08696 Corylus avellana HOM05D002031 ORTHO05D002143 3.6e-12 77.0 127 44.1
MD14G1119100 Malus domestica HOM05D002031 ORTHO05D002143 3.6e-12 77.0 127 40.9
Thecc.02G087800 Theobroma cacao HOM05D002031 ORTHO05D002143 3.6e-12 77.0 139 41.7
TWI38G1341 Tripterygium wilfordii HOM05D002031 ORTHO05D002143 3.6e-12 77.0 127 42.5
Rhsim01G0060100 Rhododendron simsii HOM05D002031 ORTHO05D002143 4.7e-12 76.6 127 44.1
Eucgr.B03733 Eucalyptus grandis HOM05D002031 ORTHO05D002143 6.1e-12 76.3 127 42.5
CSS0022416 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 1.0e-11 75.5 128 42.2
PGR042G2447 Punica granatum HOM05D002031 ORTHO05D002143 1.0e-11 75.5 116 44.0
EL10Ac4g07824 Beta vulgaris HOM05D002031 ORTHO05D002143 1.4e-11 75.1 127 41.7
Aqoxy7G01542 Aquilegia oxysepala HOM05D002031 ORTHO05D002143 1.8e-11 74.7 137 38.7
Dinv38874 Davidia involucrata HOM05D002031 ORTHO05D002143 1.8e-11 74.7 128 43.0
Hund01994 Selenicereus undatus HOM05D002031 ORTHO05D002143 1.8e-11 74.7 127 42.5
Ca_12427_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.3e-11 74.3 105 44.8
Gohir.A12G231600 Gossypium hirsutum HOM05D002031 ORTHO05D002143 2.3e-11 74.3 116 44.0
Gorai.008G251900 Gossypium raimondii HOM05D002031 ORTHO05D002143 2.3e-11 74.3 116 44.0
Gohir.D12G235475 Gossypium hirsutum HOM05D002031 ORTHO05D002143 3.0e-11 73.9 116 44.0
QL02p031758 Quercus lobata HOM05D002031 ORTHO05D002143 3.0e-11 73.9 127 40.9
Ca_00014_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 4.0e-11 73.6 199 36.2
Ca_02487_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.2e-11 73.2 78 59.0
Ca_23646_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.2e-11 73.2 51 74.5
Sc16g0001710 Simmondsia chinensis HOM05D002031 ORTHO05D002143 8.9e-11 72.4 127 41.7
Cc08_g15620 Coffea canephora HOM05D002031 ORTHO05D002143 1.2e-10 72.0 128 39.8
Sed0022859 Sechium edule HOM05D002031 ORTHO05D002143 1.2e-10 72.0 128 42.2
Zm00001eb081790 Zea mays HOM05D002031 ORTHO05D002143 1.2e-10 72.0 148 37.2
MELO3C016316.2 Cucumis melo HOM05D002031 ORTHO05D002143 1.5e-10 71.6 127 41.7
Nn1g02857 Nelumbo nucifera HOM05D002031 ORTHO05D002143 1.5e-10 71.6 116 42.2
CiPaw.12G086300 Carya illinoinensis HOM05D002031 ORTHO05D002143 2.0e-10 71.2 127 40.9
Nitab4.5_0000223g0060 Nicotiana tabacum HOM05D002031 ORTHO05D002143 2.0e-10 71.2 128 39.8
CiPaw.11G125500 Carya illinoinensis HOM05D002031 ORTHO05D002143 2.6e-10 70.9 195 34.4
Ca_05661_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.6e-10 70.9 43 83.7
Ca_22847_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 2.6e-10 70.9 85 52.9
COL.COLO4_21733 Corchorus olitorius HOM05D002031 ORTHO05D002143 2.6e-10 70.9 116 42.2
Peaxi162Scf00074g01326 Petunia axillaris HOM05D002031 ORTHO05D002143 3.4e-10 70.5 128 40.6
CANSAT21G0572 Cannabis sativa HOM05D002031 ORTHO05D002143 4.4e-10 70.1 127 40.2
Ca_03472_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 5.7e-10 69.7 123 41.5
Sabra01G0071200 Salix brachista HOM05D002031 ORTHO05D002143 7.5e-10 69.3 115 43.5
Ca_19985_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 9.8e-10 68.9 140 38.6
CsaV3_4G006340 Cucumis sativus L. HOM05D002031 ORTHO05D002143 9.8e-10 68.9 127 40.9
HanXRQChr07g0188771 Helianthus annuus HOM05D002031 ORTHO05D002143 9.8e-10 68.9 127 38.6
Lj8A212T64 Lonicera japonica HOM05D002031 ORTHO05D002143 9.8e-10 68.9 116 41.4
Nitab4.5_0002564g0040 Nicotiana tabacum HOM05D002031 ORTHO05D002143 1.3e-09 68.6 128 38.3
Lsat_1_v5_gn_6_11741 Lactuca sativa HOM05D002031 ORTHO05D002143 1.7e-09 68.2 116 41.4
PSO135G0409 Papaver somniferum HOM05D002031 ORTHO05D002143 1.7e-09 68.2 223 31.8
CAN.G532.55 Capsicum annuum HOM05D002031 ORTHO05D002143 3.7e-09 67.0 133 36.8
MSTRG.17692 Avicennia marina HOM05D002031 ORTHO05D002143 4.9e-09 66.6 127 39.4
AUR62015765 Chenopodium quinoa HOM05D002031 ORTHO05D002143 4.9e-09 66.6 127 38.6
AUR62020448 Chenopodium quinoa HOM05D002031 ORTHO05D002143 4.9e-09 66.6 127 38.6
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.9e-09 66.6 162 38.3
Manes.01G048100 Manihot esculenta HOM05D002031 ORTHO05D002143 6.4e-09 66.2 127 37.8
TAR374G0371 Trochodendron aralioides HOM05D002031 ORTHO05D002143 8.3e-09 65.9 128 40.6
ATR0733G058 Amborella trichopoda HOM05D002031 ORTHO05D002143 1.8e-08 64.7 116 40.5
Os09g0515500 Oryza sativa ssp. japonica HOM05D002031 ORTHO05D002143 1.8e-08 64.7 111 37.8
Solyc08g081900.4 Solanum lycopersicum HOM05D002031 ORTHO05D002143 1.8e-08 64.7 128 38.3
Sopen08g030190 Solanum pennellii HOM05D002031 ORTHO05D002143 1.8e-08 64.7 128 38.3
Ca_25736_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.4e-08 64.3 271 30.6
CDE01G0811 Ceratophyllum demersum HOM05D002031 ORTHO05D002143 3.2e-08 63.9 231 29.9
ECA233G2686 Erigeron canadensis HOM05D002031 ORTHO05D002143 4.1e-08 63.5 98 40.8
Potri.001G095500 Populus trichocarpa HOM05D002031 ORTHO05D002143 4.1e-08 63.5 115 40.9
PGSC0003DMG400012166 Solanum tuberosum HOM05D002031 ORTHO05D002143 4.1e-08 63.5 128 37.5
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 5.4e-08 63.2 176 33.5
PSO384G2610 Papaver somniferum HOM05D002031 ORTHO05D002143 7.0e-08 62.8 221 28.5
unitig_22.g5671 Utricularia gibba HOM05D002031 ORTHO05D002143 9.2e-08 62.4 127 36.2
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.2e-07 62.0 135 38.5
SGA_v2.0_scaffold295G47498 Striga asiatica HOM05D002031 ORTHO05D002143 1.6e-07 61.6 127 38.6
Ca_20698_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.0e-07 61.2 62 58.1
Ca_04566_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.7e-07 60.8 47 70.2
Ca_14649_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.5e-07 60.5 72 54.2
Migut.N02466 Erythranthe guttata HOM05D002031 ORTHO05D002143 3.5e-07 60.5 127 37.0
Ca_21033_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 4.6e-07 60.1 40 75.0
Ca_11757_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.8e-07 59.3 80 48.8
Ca_12074_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.8e-07 59.3 35 82.9
MBI16_g36972_MAGBIO Magnolia biondii HOM05D002031 ORTHO05D002143 7.8e-07 59.3 359 26.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.3e-06 58.5 205 33.2
Ca_26899_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.3e-06 58.5 49 63.3
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.3e-06 58.5 144 37.5
DCAR_008535 Daucus carota HOM05D002031 ORTHO05D002143 3.0e-06 57.4 116 35.3
Ca_22938_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.0e-06 56.6 49 59.2
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 5.0e-06 56.6 133 36.1
Ca_03099_v3 Cicer arietinum L. HOM05D002502 ORTHO05D018988 6.6e-06 56.2 77 49.4
arahy.Tifrunner.gnm1.ann1.NNXL48 Arachis hypogaea HOM05D002031 ORTHO05D002143 8.6e-06 55.8 36 75.0
Ca_17040_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 8.6e-06 55.8 46 63.0


User provided reference genes

Program Settings