Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.3e-177 626.3 322 100.0
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 4.0e-155 551.6 323 88.9
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 1.7e-145 519.6 323 85.1
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.1e-144 516.9 325 82.8
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 2.4e-144 515.8 322 83.9
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.1e-143 512.7 318 84.6
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.4e-139 500.0 321 81.3
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 5.8e-138 494.6 320 79.1
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.9e-133 479.6 323 78.6
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.6e-132 476.5 321 78.2
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 6.2e-132 474.6 321 77.6
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.1e-131 473.8 376 69.7
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 1.0e-126 457.2 322 75.2
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 8.4e-121 437.6 322 72.4
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.5e-120 436.0 326 72.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 2.5e-120 436.0 324 71.3
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 1.8e-118 429.9 321 70.7
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 3.0e-118 429.1 321 71.0
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 9.7e-117 424.1 321 70.4
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 4.8e-116 421.8 324 70.1
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.4e-115 420.2 372 63.2
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.4e-115 419.5 324 69.4
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 3.1e-115 419.1 316 69.3
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.3e-115 418.3 321 68.5
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 6.9e-115 417.9 321 68.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 9.0e-115 417.5 317 70.0
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 3.4e-114 415.6 322 67.4
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 4.5e-114 415.2 324 69.4
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.7e-114 414.5 324 69.4
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.3e-113 413.7 315 67.9
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.3e-113 413.7 321 69.2
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.7e-113 413.3 324 68.5
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.7e-113 413.3 324 69.1
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 3.8e-113 412.1 322 68.6
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.2e-112 408.7 324 68.5
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 5.5e-112 408.3 316 68.0
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 7.2e-112 407.9 315 69.8
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.1e-111 406.4 338 65.4
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.8e-110 403.3 322 68.0
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 2.3e-110 402.9 321 66.4
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 3.9e-110 402.1 322 65.8
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 3.9e-110 402.1 325 66.5
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 8.8e-110 401.0 309 69.6
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 2.0e-109 399.8 322 67.4
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.0e-109 399.8 331 67.1
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 2.5e-109 399.4 321 66.0
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.5e-109 399.4 321 66.0
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.4e-109 397.9 324 67.0
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 7.4e-109 397.9 321 66.4
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 3.7e-108 395.6 321 64.2
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.4e-107 393.7 320 66.2
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.8e-107 393.3 318 66.4
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.1e-107 392.5 325 66.2
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 5.3e-107 391.7 321 65.7
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.2e-106 390.6 320 66.6
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.6e-106 389.4 330 62.7
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.6e-106 389.4 321 65.1
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.4e-106 389.0 328 65.2
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.5e-104 382.9 316 65.2
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 2.1e-103 379.8 322 65.8
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 2.1e-103 379.8 365 60.0
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.7e-103 379.4 336 62.8
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 7.9e-103 377.9 321 60.7
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 7.9e-103 377.9 324 63.6
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 3.0e-102 375.9 379 56.5
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 5.1e-102 375.2 334 59.3
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 5.1e-102 375.2 321 63.6
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 4.4e-101 372.1 328 61.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 2.2e-100 369.8 324 62.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.8e-100 369.4 318 62.6
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 6.3e-100 368.2 331 61.0
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.4e-99 367.1 321 63.2
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 1.8e-99 366.7 321 62.3
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-99 366.7 321 61.4
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 7.0e-99 364.8 321 61.7
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.2e-98 364.0 321 61.4
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.0e-98 363.2 322 63.4
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 4.5e-98 362.1 324 59.6
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 2.9e-97 359.4 325 60.9
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 2.9e-97 359.4 325 60.9
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 2.9e-97 359.4 347 58.8
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 2.9e-97 359.4 305 64.9
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 3.8e-97 359.0 324 60.2
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.1e-96 357.5 317 60.9
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.5e-96 357.1 323 60.1
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 2.5e-96 356.3 323 60.4
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 5.5e-96 355.1 326 59.8
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 7.2e-96 354.8 323 60.1
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 7.2e-96 354.8 323 60.1
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 7.2e-96 354.8 323 60.1
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 7.2e-96 354.8 321 61.4
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.6e-95 353.6 325 58.8
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 3.0e-94 349.4 303 63.0
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 8.8e-94 347.8 324 57.7
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 2.0e-93 346.7 324 60.2
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.0e-93 346.7 324 57.4
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 3.3e-93 345.9 322 60.9
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.3e-89 334.0 329 58.7
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.5e-88 330.5 317 55.2
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.6e-87 327.0 321 57.9
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 2.1e-87 326.6 307 58.0
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 5.2e-86 322.0 310 59.4
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 8.8e-86 321.2 269 65.1
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 7.5e-85 318.2 267 64.4
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.9e-81 306.2 320 56.2
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 6.5e-81 305.1 314 54.5
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.1e-80 304.3 268 63.4
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.9e-80 303.5 361 52.4
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 4.0e-78 295.8 314 53.5
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.8e-75 287.0 217 71.4
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 4.0e-70 269.2 310 50.6
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 1.8e-67 260.4 319 50.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.8e-67 260.4 322 50.6
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.8e-67 260.4 273 52.7
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 4.7e-63 245.7 316 45.9
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 3.1e-62 243.0 316 45.3
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 5.8e-53 212.2 326 42.0
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 6.2e-47 192.2 179 60.3
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 8.1e-47 191.8 321 37.7
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.0e-45 187.2 269 45.7
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 9.9e-45 184.9 110 87.3
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 2.8e-39 166.8 110 78.2
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 4.4e-37 159.5 220 49.1
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 6.4e-36 155.6 185 45.4
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 9.3e-35 151.8 105 73.3
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 2.7e-34 150.2 135 62.2
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 7.8e-34 148.7 110 69.1
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.3e-31 141.4 100 72.0
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.4e-27 127.1 231 39.4
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.9e-24 117.5 101 64.4
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 4.0e-22 109.8 332 29.5
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 1.6e-15 87.8 46 93.5
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 1.6e-15 87.8 46 93.5
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 1.6e-15 87.8 46 93.5
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.1e-15 87.4 83 59.0
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 1.1e-14 85.1 67 64.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-14 83.6 45 91.1
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 5.3e-14 82.8 54 77.8
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 6.9e-14 82.4 91 50.5
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 2.2e-12 77.4 54 72.2
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 4.9e-12 76.3 68 57.4
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.9e-10 68.9 112 36.6
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 1.8e-09 67.8 45 64.4
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.8e-09 67.8 53 66.0
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 3.0e-09 67.0 51 70.6
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 8.2e-07 58.9 36 77.8


User provided reference genes

Program Settings