Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 0.0e+00 1208.7 612 100.0
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 8.4e-312 1073.2 598 90.6
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 6.3e-311 1070.1 607 88.5
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 6.3e-311 1070.1 607 88.3
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.1e-308 1060.4 606 87.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.1e-305 1052.7 607 87.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 3.1e-305 1051.2 607 87.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 3.8e-287 991.1 606 85.3
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 6.4e-279 963.8 606 80.5
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.8e-272 940.6 606 78.2
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.6e-269 932.6 602 78.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.6e-269 931.0 609 77.5
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.9e-267 925.6 608 77.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.6e-266 922.5 531 89.6
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 6.3e-266 920.6 606 77.1
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.0e-265 916.8 602 77.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 9.0e-265 916.8 601 78.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.2e-264 916.4 604 76.7
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.6e-264 915.2 596 77.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 3.4e-264 914.8 592 78.5
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.2e-262 908.3 601 76.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 6.1e-261 904.0 602 76.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 7.9e-261 903.7 599 76.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 8.7e-260 900.2 600 75.3
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.9e-259 899.0 600 76.0
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.5e-259 898.7 600 75.8
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.3e-259 898.3 608 75.8
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.3e-258 896.3 589 77.4
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.3e-258 896.3 597 77.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.3e-258 896.3 607 75.5
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.8e-258 895.2 598 76.8
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.6e-256 888.6 601 74.7
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.4e-256 888.3 599 75.3
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-255 885.2 599 75.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 5.0e-255 884.4 617 75.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-254 883.2 599 75.0
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.2e-254 881.7 558 79.6
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.2e-254 881.7 558 79.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 4.2e-254 881.3 599 74.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.5e-254 880.9 599 74.6
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.5e-254 880.9 604 73.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 9.4e-254 880.2 599 74.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.6e-253 879.4 609 73.4
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 6.1e-253 877.5 605 74.7
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 7.9e-253 877.1 582 77.3
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 7.9e-253 877.1 604 73.2
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.4e-252 876.3 597 75.4
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-252 876.3 604 74.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.8e-252 875.9 601 74.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.3e-252 875.5 605 74.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.3e-252 875.5 595 75.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.0e-252 875.2 598 74.1
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.9e-252 874.8 607 73.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 4.3e-251 871.3 605 74.0
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.3e-251 871.3 632 72.6
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.7e-251 870.9 597 74.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 7.4e-251 870.5 596 74.5
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 9.7e-251 870.2 604 73.0
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.3e-250 869.8 597 74.9
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.4e-249 866.3 599 75.0
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.1e-249 864.8 585 75.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.3e-249 864.4 603 74.3
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.0e-248 862.4 604 74.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.9e-246 855.9 619 72.9
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.5e-246 855.5 612 72.9
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 3.2e-246 855.1 619 73.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.4e-246 853.6 624 71.0
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.4e-246 853.6 589 74.4
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.2e-245 853.2 598 73.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.1e-245 852.4 592 74.2
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.1e-245 852.4 603 73.1
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 6.1e-245 850.9 594 73.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.1e-245 850.9 575 75.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 6.7e-244 847.4 568 75.5
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 6.7e-244 847.4 604 72.2
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 6.7e-244 847.4 604 73.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.7e-242 842.8 607 72.3
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 4.8e-242 841.3 610 70.8
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.7e-237 825.5 602 70.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.0e-236 823.5 603 71.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 5.2e-236 821.2 518 79.0
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.2e-236 821.2 545 77.1
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 5.2e-236 821.2 602 70.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.8e-234 814.7 613 69.5
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.5e-232 808.5 580 72.8
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.5e-232 808.5 617 68.6
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.5e-232 808.1 564 73.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.5e-232 808.1 609 69.8
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.9e-232 807.7 601 68.9
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.9e-230 802.7 577 71.2
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.2e-230 802.0 605 69.4
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.4e-228 796.6 570 72.5
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.3e-228 795.8 609 67.8
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 2.2e-226 789.3 614 67.3
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.8e-226 788.9 568 72.4
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.8e-226 788.1 602 69.1
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 6.3e-226 787.7 641 64.3
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 6.3e-226 787.7 603 69.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-225 786.9 600 69.0
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.1e-225 785.4 571 71.1
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 5.4e-225 784.6 582 70.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 9.1e-225 783.9 597 68.3
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.7e-224 782.3 597 68.2
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.2e-223 779.2 576 70.7
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-222 776.5 597 68.0
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.5e-222 776.5 570 71.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.9e-222 776.2 574 71.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 5.5e-222 774.6 600 67.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 5.5e-222 774.6 600 67.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 7.2e-222 774.2 582 69.8
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.7e-221 772.3 600 67.5
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.7e-221 771.5 620 65.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 3.0e-220 768.8 609 65.2
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 8.8e-220 767.3 575 69.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 8.8e-220 767.3 575 69.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.4e-219 765.4 612 67.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.8e-215 751.9 604 67.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.5e-214 750.0 597 65.3
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-212 743.8 533 71.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.2e-212 741.5 604 66.2
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.8e-212 741.1 583 66.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.2e-211 740.3 602 65.9
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.4e-210 734.6 597 63.0
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 4.1e-209 731.9 593 66.9
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.6e-208 729.9 554 70.2
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.0e-207 724.9 586 64.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.0e-207 724.9 595 64.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.4e-204 716.8 550 66.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.3e-202 707.6 519 69.6
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 6.6e-199 698.0 524 68.1
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 5.6e-198 694.9 608 59.7
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-195 686.8 633 58.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.8e-195 684.1 527 66.2
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-194 683.7 527 66.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 5.4e-193 678.3 419 80.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 8.6e-191 671.0 417 79.6
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.5e-190 669.5 605 59.7
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 3.3e-190 669.1 587 62.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.0e-187 659.8 411 80.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.9e-187 657.5 409 79.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.4e-186 654.4 553 62.0
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.1e-185 652.1 495 66.5
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 7.8e-184 647.9 519 65.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.8e-181 639.4 528 62.1
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 7.9e-168 594.7 572 54.5
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.3e-165 587.4 460 68.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.5e-152 542.7 384 71.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.9e-150 537.0 475 57.9
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.8e-143 513.8 523 55.1
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.3e-134 483.0 342 71.6
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.2e-129 466.5 340 71.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.7e-128 463.4 458 55.7
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.2e-99 368.2 249 74.7
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.1e-68 263.5 157 82.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.9e-66 256.9 145 87.6
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 5.6e-49 199.9 199 55.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.7e-48 197.2 199 54.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.4e-46 190.7 167 58.1
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.2e-45 188.0 167 57.5
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.2e-36 157.5 123 64.2
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.2e-35 155.6 96 80.2
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.8e-24 117.9 90 67.8
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.3e-23 113.6 90 66.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-21 109.4 318 28.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-20 104.4 115 51.3
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.4e-20 102.8 281 29.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 8.8e-18 96.3 60 78.3
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.8e-16 90.5 187 35.3
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.3e-16 90.1 187 31.0
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.4e-15 89.0 86 54.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.8e-15 88.6 123 36.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.4e-12 79.0 78 64.1
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.9e-12 78.6 72 65.3
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.7e-08 64.3 74 54.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 7.0e-07 60.1 58 48.3
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-06 58.5 57 56.1


User provided reference genes

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