Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 2.3e-273 944.9 463 100.0
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 1.1e-217 760.0 462 82.3
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 7.7e-216 753.8 510 75.7
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 5.7e-211 737.6 396 90.7
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 1.9e-206 722.6 468 77.4
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 3.6e-205 718.4 468 76.5
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 2.3e-204 715.7 445 78.9
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 2.8e-202 708.8 451 77.6
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 1.5e-195 686.4 442 76.9
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 4.5e-192 674.9 477 70.6
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 1.0e-191 673.7 473 71.2
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 2.8e-186 655.6 471 69.0
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 2.8e-186 655.6 427 73.8
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 1.4e-185 653.3 471 68.8
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 1.8e-185 652.9 469 69.7
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 4.1e-185 651.7 467 69.4
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 5.4e-185 651.4 439 71.5
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 9.1e-185 650.6 432 72.2
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 1.2e-184 650.2 430 73.0
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 3.5e-184 648.7 467 69.2
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 1.7e-183 646.4 470 68.9
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 2.9e-183 645.6 472 68.6
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 3.8e-183 645.2 431 71.5
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 1.5e-182 643.3 450 70.7
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 1.2e-181 640.2 429 71.1
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 1.6e-181 639.8 461 67.9
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 3.6e-181 638.6 440 69.5
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 4.7e-181 638.3 429 70.9
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 8.0e-181 637.5 393 76.1
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 2.3e-180 636.0 429 70.6
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 5.2e-180 634.8 479 65.3
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 1.5e-179 633.3 477 66.7
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 4.4e-179 631.7 469 67.4
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 5.7e-179 631.3 392 75.5
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 7.5e-179 630.9 475 66.1
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 1.3e-178 630.2 426 70.2
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 1.7e-178 629.8 391 75.2
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 2.2e-178 629.4 455 69.7
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 2.8e-178 629.0 392 75.8
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 2.8e-178 629.0 477 66.5
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 4.9e-178 628.2 386 75.4
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 7.0e-177 624.4 388 75.5
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.6e-176 623.2 432 70.6
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 3.5e-176 622.1 457 67.6
RcHm_v2.0_Chr7g0220181 Rosa chinensis HOM05D006686 ORTHO05D008463 7.7e-176 620.9 367 79.6
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 2.3e-175 619.4 471 66.2
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 2.9e-175 619.0 429 69.9
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 1.1e-174 617.1 427 69.3
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 5.6e-174 614.8 451 66.7
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 1.6e-173 613.2 432 69.7
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 2.1e-173 612.8 437 68.0
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 1.0e-172 610.5 470 63.4
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 1.8e-172 609.8 468 65.2
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 3.0e-172 609.0 427 68.1
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 5.2e-172 608.2 427 68.1
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 6.8e-172 607.8 429 68.3
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 6.8e-172 607.8 428 69.4
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 7.5e-171 604.4 404 69.8
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 3.7e-170 602.1 395 72.4
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 3.7e-170 602.1 456 65.1
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 4.9e-170 601.7 427 69.3
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 6.4e-170 601.3 395 72.4
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 6.4e-170 601.3 395 72.4
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 6.4e-170 601.3 391 72.9
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 8.3e-170 600.9 429 67.6
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 1.8e-169 599.7 427 66.5
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 1.8e-169 599.7 395 72.2
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 1.8e-169 599.7 393 72.3
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 1.8e-169 599.7 365 75.3
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 7.0e-169 597.8 393 72.0
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 2.7e-168 595.9 434 67.1
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 4.6e-168 595.1 448 65.0
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 7.8e-168 594.3 443 65.5
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 7.8e-168 594.3 429 67.4
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 1.0e-167 594.0 391 71.6
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 2.3e-167 592.8 391 71.1
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 1.1e-166 590.5 391 71.1
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 5.6e-166 588.2 429 67.4
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 4.7e-165 585.1 422 67.5
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 2.3e-164 582.8 398 68.6
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 1.9e-161 573.2 466 61.4
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 2.4e-161 572.8 459 62.1
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 3.5e-160 568.9 471 60.7
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 6.0e-160 568.2 389 69.7
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 8.9e-156 554.3 370 70.5
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 9.8e-155 550.8 389 66.3
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 3.5e-152 542.3 437 60.9
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 4.6e-152 542.0 440 62.5
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 9.5e-150 534.3 460 57.2
CiPaw.06G176300 Carya illinoinensis HOM05D006686 ORTHO05D008463 2.8e-149 532.7 333 76.3
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 2.4e-145 519.6 485 57.7
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 1.5e-142 510.4 372 64.8
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 2.5e-142 509.6 396 64.4
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 9.6e-134 481.1 452 55.1
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 3.0e-127 459.5 429 54.1
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 6.2e-117 425.2 436 51.6
Glyma.17G001600 Glycine max HOM05D006686 ORTHO05D008463 3.4e-107 392.9 259 76.4
Haze_09995 Corylus avellana HOM05D006686 ORTHO05D008463 1.1e-105 387.9 212 84.9
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 5.7e-94 349.0 334 58.4
Cre09.g399626 Chlamydomonas reinhardtii HOM05D006686 ORTHO05D008463 1.4e-89 334.3 452 40.5
PRCOL_00000210 Prasinoderma coloniale HOM05D006686 ORTHO05D008463 3.2e-89 333.2 436 42.7
Haze_27211 Corylus avellana HOM05D006686 ORTHO05D008463 7.2e-89 332.0 387 44.2
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 1.7e-82 310.8 217 71.0
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 1.1e-76 291.6 265 58.9
Oeu000154.1 Olea europaea HOM05D006686 ORTHO05D008463 1.6e-75 287.7 320 49.7
Eucgr.A00755 Eucalyptus grandis HOM05D006686 ORTHO05D008463 3.6e-64 250.0 154 75.3
CARHR293020 Cardamine hirsuta HOM05D006686 ORTHO05D008463 5.9e-59 232.6 160 68.8
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 4.3e-49 199.9 255 46.3
Nitab4.5_0004668g0030 Nicotiana tabacum HOM05D006686 ORTHO05D008463 8.6e-42 175.6 128 65.6
CBR_g48698 Chara braunii HOM05D006686 ORTHO05D008463 2.9e-29 134.0 123 56.1
MELO3C032221.2 Cucumis melo HOM05D006686 ORTHO05D008463 3.5e-27 127.1 81 77.8
Hund15396 Selenicereus undatus HOM05D006686 ORTHO05D008463 3.0e-26 124.0 75 74.7
Haze_09994 Corylus avellana HOM05D006686 ORTHO05D008463 6.6e-26 122.9 179 45.8
Actinidia26190 Actinidia chinensis HOM05D006686 ORTHO05D008463 5.6e-25 119.8 67 82.1
Peaxi162Scf00011g01844 Petunia axillaris HOM05D006686 ORTHO05D008463 1.0e-18 99.0 130 43.1
Haze_05751 Corylus avellana HOM05D006686 ORTHO05D008463 4.8e-16 90.1 78 57.7
CBR_g48699 Chara braunii HOM05D006686 ORTHO05D008463 1.1e-15 89.0 85 50.6
CiPaw.06G176500 Carya illinoinensis HOM05D006686 ORTHO05D008463 8.7e-10 69.3 135 37.0


User provided reference genes

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