Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 1.2e-80 303.1 159 100.0
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 2.4e-60 235.7 163 81.6
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 2.4e-60 235.7 151 85.4
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 7.5e-54 214.2 150 79.3
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 3.2e-52 208.8 158 74.7
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 1.2e-48 196.8 150 70.0
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.6e-48 196.4 127 80.3
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 2.8e-48 195.7 152 71.7
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 6.2e-48 194.5 147 69.4
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.4e-47 193.4 152 64.5
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.2e-46 190.3 147 68.0
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 2.6e-46 189.1 154 64.9
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 3.4e-46 188.7 128 73.4
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 1.3e-45 186.8 147 61.2
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 1.7e-45 186.4 148 64.9
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 2.2e-45 186.0 124 77.4
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 2.2e-45 186.0 124 75.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.9e-45 185.7 127 70.1
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 3.7e-45 185.3 127 77.2
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 6.4e-45 184.5 152 60.5
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 6.4e-45 184.5 153 63.4
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 6.4e-45 184.5 137 67.2
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 6.4e-45 184.5 147 64.6
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 8.3e-45 184.1 123 71.5
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.1e-44 183.7 148 62.2
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 1.1e-44 183.7 126 70.6
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 1.4e-44 183.3 153 62.7
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 1.4e-44 183.3 153 62.7
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 1.4e-44 183.3 125 70.4
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 1.4e-44 183.3 145 62.8
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.9e-44 183.0 153 62.7
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 2.4e-44 182.6 152 59.9
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 2.4e-44 182.6 127 70.9
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 3.2e-44 182.2 124 70.2
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 4.1e-44 181.8 147 61.2
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.1e-44 181.8 150 62.0
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 5.4e-44 181.4 127 68.5
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 9.2e-44 180.6 126 68.3
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 9.2e-44 180.6 124 72.6
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 9.2e-44 180.6 125 72.8
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 9.2e-44 180.6 124 71.0
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 9.2e-44 180.6 124 72.6
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 1.6e-43 179.9 127 67.7
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.6e-43 179.9 152 59.2
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 1.6e-43 179.9 127 72.4
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 2.0e-43 179.5 126 67.5
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.7e-43 179.1 124 71.8
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 3.5e-43 178.7 148 64.2
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 6.0e-43 177.9 125 67.2
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 6.0e-43 177.9 125 68.8
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 7.8e-43 177.6 122 71.3
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 7.8e-43 177.6 125 69.6
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.0e-42 177.2 124 71.0
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.0e-42 177.2 133 72.9
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.7e-42 176.4 126 67.5
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 1.7e-42 176.4 143 63.6
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.7e-42 176.4 125 72.8
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 2.3e-42 176.0 128 68.8
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 2.3e-42 176.0 124 69.4
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 3.0e-42 175.6 124 70.2
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 3.0e-42 175.6 124 75.8
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 3.9e-42 175.3 143 62.9
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 6.6e-42 174.5 125 70.4
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 1.1e-41 173.7 124 74.2
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.1e-41 173.7 126 64.3
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.1e-41 173.7 128 64.8
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 1.9e-41 172.9 131 65.6
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 2.5e-41 172.6 124 69.4
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 2.5e-41 172.6 150 64.0
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 4.3e-41 171.8 147 66.0
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 4.3e-41 171.8 133 71.4
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 4.3e-41 171.8 128 64.8
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 5.6e-41 171.4 127 62.2
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 7.3e-41 171.0 124 75.8
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 9.5e-41 170.6 122 69.7
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 9.5e-41 170.6 128 63.3
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 9.5e-41 170.6 123 66.7
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.6e-40 169.9 125 66.4
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.6e-40 169.9 127 63.8
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.1e-40 169.5 126 63.5
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.1e-40 169.5 126 63.5
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.6e-40 168.7 124 75.0
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 3.6e-40 168.7 123 67.5
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 3.6e-40 168.7 123 67.5
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 3.6e-40 168.7 128 62.5
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 4.7e-40 168.3 124 65.3
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 4.7e-40 168.3 128 62.5
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 6.2e-40 167.9 128 61.7
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 8.1e-40 167.5 126 71.4
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 1.1e-39 167.2 126 62.7
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.1e-39 167.2 128 60.9
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.4e-39 166.8 123 66.7
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 3.1e-39 165.6 123 69.9
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 1.5e-38 163.3 122 76.2
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 3.4e-38 162.2 123 64.2
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 7.5e-38 161.0 120 65.8
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 4.9e-37 158.3 126 65.1
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.4e-36 156.8 152 55.3
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 2.4e-36 156.0 116 64.7
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.1e-35 152.9 126 60.3
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 2.7e-35 152.5 129 60.5
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 4.6e-35 151.8 123 69.1
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.0e-34 150.6 124 61.3
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.5e-33 146.0 125 57.6
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 4.3e-33 145.2 129 55.8
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 1.2e-30 137.1 147 48.3
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.7e-29 133.3 152 47.4
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 1.4e-28 130.2 121 52.9
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 5.4e-28 128.3 152 46.1
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 1.6e-27 126.7 93 64.5
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 3.9e-26 122.1 124 53.2
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 6.6e-26 121.3 121 53.7
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.3e-25 119.0 126 48.4
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 3.6e-24 115.5 99 58.6
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 2.4e-20 102.8 81 60.5
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.2e-19 100.5 85 57.6
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 2.3e-18 96.3 90 60.0
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 5.1e-18 95.1 123 43.9
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.1e-17 94.0 79 55.7
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 4.3e-17 92.0 111 43.2
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 7.3e-17 91.3 150 39.3
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 4.4e-14 82.0 87 57.5
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 8.7e-10 67.8 116 37.1
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 9.9e-06 54.3 118 34.7


User provided reference genes

Program Settings