Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.9e-248 862.1 440 100.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 5.4e-211 737.6 460 84.3
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 4.0e-206 721.5 452 84.7
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 2.4e-195 685.6 441 79.8
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 4.2e-195 684.9 461 78.1
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.7e-193 679.5 450 78.0
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.7e-193 679.5 462 77.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.3e-193 679.1 435 80.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.9e-193 678.3 461 77.9
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 8.7e-193 677.2 450 77.3
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.5e-192 676.4 445 79.3
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 9.9e-189 663.7 418 84.9
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.8e-175 619.0 445 71.0
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.1e-174 615.5 444 69.6
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 3.1e-174 615.5 432 72.5
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 4.0e-174 615.1 448 70.3
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 8.4e-172 607.4 449 68.2
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 5.5e-171 604.7 444 69.4
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 9.3e-171 604.0 441 71.9
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.6e-170 603.2 448 69.0
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 4.6e-170 601.7 441 69.8
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.1e-168 597.0 448 69.0
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.9e-168 596.3 449 66.6
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.5e-168 595.9 465 69.0
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.5e-168 595.9 432 70.4
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 4.3e-168 595.1 448 68.1
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 7.4e-168 594.3 435 69.0
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 7.4e-168 594.3 473 67.0
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 9.6e-168 594.0 442 69.9
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.3e-167 593.6 443 67.7
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.3e-167 593.6 449 68.4
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.8e-167 592.4 448 67.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.4e-166 589.3 448 67.9
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.0e-166 588.6 442 69.5
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 4.5e-165 585.1 442 67.0
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 2.2e-164 582.8 449 66.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 4.9e-164 581.6 489 64.2
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.1e-162 576.2 436 68.3
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.7e-162 575.9 464 64.7
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 4.6e-162 575.1 439 68.1
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 3.9e-161 572.0 441 65.8
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.5e-160 570.1 435 67.4
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.9e-160 569.7 441 66.2
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 3.3e-160 568.9 473 63.8
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 5.7e-160 568.2 432 67.6
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 9.7e-160 567.4 435 67.6
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 2.8e-159 565.8 441 67.1
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 4.8e-159 565.1 441 65.8
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 4.1e-158 562.0 435 67.1
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 9.0e-158 560.8 450 65.6
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 9.0e-158 560.8 437 65.7
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.2e-157 560.5 434 68.2
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 5.9e-157 558.1 435 65.1
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 5.9e-157 558.1 437 65.7
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 2.9e-156 555.8 479 61.4
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 5.0e-156 555.1 412 69.7
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 6.5e-156 554.7 445 66.1
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 6.5e-156 554.7 432 66.0
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.4e-155 553.5 443 65.5
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.4e-155 553.5 439 65.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.4e-153 547.0 507 58.2
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 8.8e-153 544.3 387 75.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.1e-152 543.9 440 64.1
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.3e-152 542.3 429 63.9
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.7e-151 540.0 442 63.3
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 2.8e-151 539.3 440 63.4
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.8e-150 536.6 441 63.5
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.8e-150 536.6 446 63.0
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.8e-150 536.6 434 62.2
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.1e-150 535.4 442 63.1
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.2e-149 533.9 436 64.2
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.0e-149 533.1 447 64.2
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 5.9e-149 531.6 420 66.4
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 3.8e-148 528.9 448 62.7
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 9.4e-147 524.2 408 65.4
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.1e-146 523.1 442 61.8
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.7e-146 522.7 435 62.1
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 3.6e-146 522.3 435 62.1
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 3.6e-146 522.3 502 55.8
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.0e-145 520.8 431 63.6
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.4e-145 520.4 437 62.9
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 2.3e-145 519.6 435 62.8
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 2.0e-144 516.5 433 62.6
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 3.3e-144 515.8 439 62.0
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 7.4e-144 514.6 437 62.2
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 9.7e-144 514.2 437 62.7
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.3e-143 513.8 435 61.8
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.8e-143 512.7 436 61.2
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.7e-143 512.3 461 57.9
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.4e-142 510.4 437 61.8
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.4e-142 510.4 437 61.8
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.8e-142 510.0 456 58.3
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.5e-141 506.9 435 61.4
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.9e-140 502.7 440 61.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.8e-140 502.3 439 60.8
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.5e-139 499.6 475 56.8
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 7.4e-136 488.0 434 61.1
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.7e-135 486.9 378 66.1
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 8.2e-135 484.6 432 60.4
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 8.2e-135 484.6 443 58.5
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.1e-134 484.2 459 58.0
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.2e-133 480.7 465 56.8
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 2.6e-133 479.6 301 84.7
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 8.5e-132 474.6 435 60.0
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 2.5e-131 473.0 483 54.2
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 3.4e-128 462.6 476 53.6
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 4.8e-119 432.2 377 61.5
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.7e-109 399.8 437 50.3
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.4e-105 387.5 447 48.5
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.6e-104 383.3 293 70.0
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 5.8e-104 382.1 484 44.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.3e-100 370.2 368 58.2
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 4.7e-98 362.5 521 42.8
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.4e-94 350.9 470 45.3
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 3.2e-94 349.7 345 56.8
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.9e-87 325.9 298 58.4
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 2.0e-80 303.9 614 34.4
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.6e-69 267.7 528 36.6
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.6e-58 231.1 461 34.9
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 9.0e-57 225.3 450 33.6
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 7.9e-53 212.2 496 31.5
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 3.3e-51 206.8 224 56.2
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 4.2e-46 189.9 166 62.7
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.5e-43 181.4 241 48.1
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.8e-42 176.4 248 44.4
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 6.3e-26 122.9 193 45.6
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.4e-25 121.7 193 45.1
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.0e-25 119.4 118 53.4
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 5.0e-23 113.2 190 43.2
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.4e-20 105.1 91 58.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.1e-17 95.5 86 55.8
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.4e-17 94.4 86 54.7
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.9e-16 89.7 71 57.7
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.5e-15 85.9 237 30.4
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.1e-14 85.5 106 50.9
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.6e-13 81.6 108 50.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 1.5e-11 75.1 117 43.6
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 4.4e-11 73.6 63 60.3
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.8e-10 70.1 92 50.0
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.8e-09 68.2 92 48.9
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 5.4e-09 66.6 59 59.3
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 4.5e-08 63.5 142 33.8
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.0e-07 62.4 35 77.1
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.3e-07 62.0 34 82.4
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.1e-06 58.9 79 49.4
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 2.5e-06 57.8 53 54.7


User provided reference genes

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