Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 0.0e+00 1371.7 745 100.0
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 0.0e+00 1371.7 745 100.0
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 0.0e+00 1334.3 724 100.0
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 4.5e-258 894.8 804 68.3
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 2.1e-247 859.4 796 67.1
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 9.4e-232 807.4 827 62.0
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 6.5e-209 731.5 705 65.2
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 1.2e-207 727.2 817 56.9
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 1.0e-206 724.2 788 58.0
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 5.2e-206 721.8 833 56.5
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 6.8e-206 721.5 817 56.3
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 4.4e-197 692.2 802 57.6
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 4.9e-196 688.7 803 57.4
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 1.8e-195 686.8 788 54.9
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 1.6e-186 657.1 779 54.2
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 4.9e-164 582.4 779 50.6
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 1.1e-163 581.3 779 50.8
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 1.4e-155 554.3 805 48.1
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 3.9e-153 546.2 805 46.6
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 9.6e-152 541.6 828 45.7
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 7.6e-149 531.9 825 46.5
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 1.6e-146 524.2 806 46.7
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 2.3e-145 520.4 795 46.0
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 1.6e-143 514.2 827 46.1
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.4e-141 506.5 813 45.9
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 1.7e-140 504.2 780 46.3
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 1.6e-138 497.7 824 45.1
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 2.7e-138 496.9 789 46.1
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 3.9e-137 493.0 716 48.6
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.7e-135 486.5 803 44.1
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 4.5e-133 479.6 807 44.1
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 5.0e-132 476.1 803 44.8
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 1.6e-130 471.1 809 43.5
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 3.0e-129 466.8 794 43.8
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.9e-129 466.5 868 42.5
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 6.7e-129 465.7 846 41.8
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 4.3e-128 463.0 856 41.4
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.1e-126 458.4 836 41.7
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.8e-126 457.6 836 41.7
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 2.4e-126 457.2 897 41.5
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 5.3e-126 456.1 837 41.6
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 2.9e-124 450.3 834 41.0
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 1.9e-123 447.6 835 41.7
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 3.6e-122 443.4 821 41.0
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 5.1e-121 439.5 805 41.1
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.5e-120 438.0 842 40.3
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 3.3e-120 436.8 825 43.4
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 4.4e-120 436.4 795 41.6
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.7e-119 434.5 850 40.2
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 1.7e-119 434.5 803 42.1
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.4e-118 430.6 793 41.7
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.4e-118 430.6 846 40.1
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 9.1e-118 428.7 923 38.4
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 2.6e-117 427.2 837 39.5
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 1.4e-115 421.4 802 41.1
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 2.3e-113 414.1 807 40.6
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 5.2e-113 412.9 819 40.0
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 3.3e-112 410.2 822 39.4
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.4e-110 404.8 906 38.4
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 2.4e-110 404.1 906 38.4
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 4.1e-110 403.3 800 39.0
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 3.5e-109 400.2 791 40.2
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 3.8e-108 396.7 855 38.5
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 8.5e-108 395.6 656 43.4
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.1e-107 395.2 801 39.0
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 3.2e-107 393.7 794 40.8
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 3.6e-106 390.2 906 37.9
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 2.3e-105 387.5 804 39.1
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 5.2e-105 386.3 761 38.1
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 1.3e-103 381.7 807 38.3
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 2.2e-103 380.9 1012 34.5
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 1.4e-102 378.3 904 34.7
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 9.1e-102 375.6 925 36.3
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 2.0e-101 374.4 854 38.6
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 2.7e-101 374.0 892 35.1
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.0e-100 372.1 903 34.7
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 8.5e-100 369.0 848 38.6
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 1.9e-99 367.9 819 38.0
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 1.9e-99 367.9 885 35.4
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 1.9e-99 367.9 604 43.9
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 3.2e-99 367.1 795 37.1
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 1.6e-98 364.8 884 35.4
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.4e-97 361.7 864 37.7
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 3.0e-97 360.5 795 37.5
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 4.0e-97 360.1 795 39.1
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 5.2e-97 359.8 797 38.8
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 5.2e-97 359.8 819 37.1
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 4.4e-96 356.7 900 34.9
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 4.4e-96 356.7 775 37.7
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 7.5e-96 355.9 779 39.9
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 1.3e-92 345.1 560 44.8
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.1e-91 342.0 790 36.8
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.8e-89 334.7 816 34.8
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 2.6e-88 330.9 756 37.6
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 3.4e-88 330.5 785 35.9
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 1.3e-87 328.6 835 35.1
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.2e-87 327.8 520 45.8
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 8.3e-87 325.9 799 36.0
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.1e-86 325.5 787 35.7
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 7.0e-86 322.8 865 35.0
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 2.7e-85 320.9 786 36.5
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 5.0e-84 316.6 849 35.9
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 3.6e-82 310.5 683 37.9
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 1.4e-81 308.5 793 36.4
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 4.0e-81 307.0 911 34.1
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 3.4e-80 303.9 814 34.5
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 5.8e-80 303.1 551 42.5
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 1.3e-79 302.0 807 34.3
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 6.4e-79 299.7 776 36.1
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 1.4e-78 298.5 942 33.0
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 1.4e-78 298.5 968 35.6
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 1.6e-77 295.0 627 39.2
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 5.0e-76 290.0 882 32.9
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 1.5e-75 288.5 882 32.5
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 3.4e-72 277.3 873 32.8
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 9.8e-72 275.8 773 35.2
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 1.1e-70 272.3 1039 29.7
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 3.9e-68 263.8 765 33.5
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 4.7e-66 256.9 1005 30.0
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 8.1e-66 256.1 878 32.9
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 1.5e-64 251.9 733 32.6
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 4.4e-64 250.4 984 30.3
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 4.4e-64 250.4 858 32.3
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 6.4e-63 246.5 985 29.9
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 8.3e-63 246.1 865 32.0
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 1.4e-62 245.4 846 30.7
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 2.4e-62 244.6 871 33.4
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 4.1e-62 243.8 818 32.8
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 5.4e-62 243.4 840 31.4
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 1.2e-61 242.3 839 31.3
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 1.6e-61 241.9 823 32.6
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 3.5e-61 240.7 822 31.4
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 6.0e-61 240.0 855 31.2
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 1.3e-60 238.8 820 30.2
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 1.3e-60 238.8 820 30.2
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 1.3e-60 238.8 820 30.2
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 3.0e-60 237.7 717 35.3
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 5.1e-60 236.9 826 33.8
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 3.3e-59 234.2 757 33.6
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 5.6e-59 233.4 828 33.2
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 4.7e-58 230.3 867 32.1
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 6.2e-58 229.9 826 33.1
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 1.1e-57 229.2 736 32.6
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 5.8e-56 223.4 751 31.4
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 8.4e-55 219.5 818 30.6
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 1.9e-54 218.4 823 31.6
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 7.8e-53 213.0 845 30.8
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.3e-52 212.2 511 37.6
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 3.9e-52 210.7 869 31.2
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.8e-50 204.5 561 33.5
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 1.1e-46 192.6 769 30.6
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 7.3e-43 179.9 666 31.2
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 3.8e-39 167.5 727 28.2
unitig_578.g16088 Utricularia gibba HOM05D004047 ORTHO05D004772 3.9e-36 157.5 511 33.3
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 7.4e-35 153.3 728 28.6
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 3.7e-34 151.0 592 29.7
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 2.1e-29 135.2 183 47.0
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 2.7e-29 134.8 756 28.0
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 1.0e-28 132.9 241 39.4
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 4.3e-27 127.5 705 28.2
Lsat_1_v5_gn_8_51360 Lactuca sativa HOM05D004047 ORTHO05D004772 9.0e-25 119.8 327 32.7
Psat1g160560 Pisum sativum HOM05D004047 ORTHO05D004772 3.8e-23 114.4 119 58.8
Medtr8g466020 Medicago truncatula HOM05D000528 ORTHO05D026571 1.4e-22 112.5 132 61.4
Psat6g243160 Pisum sativum HOM05D004047 ORTHO05D004772 9.3e-22 109.8 100 65.0
Medtr7g007170 Medicago truncatula HOM05D004047 ORTHO05D004772 3.5e-21 107.8 98 59.2
ATR0952G001 Amborella trichopoda HOM05D004047 ORTHO05D004772 3.9e-20 104.4 180 50.6
Psat3g033200 Pisum sativum HOM05D000528 ORTHO05D011662 2.8e-18 98.2 92 57.6
HPP92_020925 Vanilla planifolia HOM05D004047 ORTHO05D004772 1.4e-14 85.9 487 24.8
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 1.8e-12 79.0 77 59.7
Medtr1g023925 Medicago truncatula HOM05D004047 ORTHO05D004772 2.5e-11 75.1 103 50.5
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.3e-11 74.7 139 41.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 2.8e-10 71.6 105 44.8
CSS0030269 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D004772 4.8e-10 70.9 109 45.0
CANSAT64G2301 Cannabis sativa HOM05D002126 ORTHO05D002195 1.7e-07 62.4 175 29.1
Hma1.2p1_2815F.1_g328920 Hydrangea macrophylla HOM05D002126 ORTHO05D002195 1.7e-07 62.4 201 29.9
CANSAT64G2703 Cannabis sativa HOM05D002126 ORTHO05D002195 2.9e-07 61.6 174 28.7
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 5.0e-07 60.8 72 55.6
MSTRG.3224 Avicennia marina HOM05D002126 ORTHO05D002195 8.5e-07 60.1 345 24.9
ECA232G1127 Erigeron canadensis HOM05D002126 ORTHO05D002195 8.5e-07 60.1 145 31.7
SEGI_27290 Sequoiadendron giganteum HOM05D004047 ORTHO05D037350 8.5e-07 60.1 327 25.4
TAR622G0039 Trochodendron aralioides HOM05D002126 ORTHO05D002195 3.2e-06 58.2 191 27.7
ECA246G3053 Erigeron canadensis HOM05D002126 ORTHO05D002195 4.2e-06 57.8 555 21.8
Glyma.18G124200 Glycine max HOM05D002126 ORTHO05D002195 4.2e-06 57.8 239 28.5
ATR1159G009 Amborella trichopoda HOM05D000156 ORTHO05D001430 7.2e-06 57.0 214 26.6
Aqoxy6G00312 Aquilegia oxysepala HOM05D000051 ORTHO05D031295 9.4e-06 56.6 339 30.4


User provided reference genes

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