Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1588.9 804 100.0
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1395.6 862 83.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 861 83.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1392.1 864 84.7
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 861 81.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 861 80.8
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 861 80.0
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 861 80.8
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1327.0 861 80.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 828 82.7
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 838 81.5
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 778 86.2
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 857 80.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 856 79.7
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 863 79.0
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 840 80.1
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 846 79.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 858 78.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 873 74.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 863 77.8
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 849 79.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 866 77.6
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 864 77.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 862 77.3
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 864 77.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 860 76.7
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 865 76.9
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 860 76.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 854 77.2
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 833 80.0
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 849 76.6
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 856 76.3
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 833 77.6
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 863 75.9
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 823 79.3
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 857 77.0
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 864 76.6
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 858 76.2
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 858 76.5
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 865 75.5
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 864 76.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 864 76.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 865 75.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 863 76.0
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 865 75.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1246.1 852 75.9
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1244.6 864 76.0
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 865 75.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 863 75.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 862 75.1
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1239.2 776 82.7
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 878 74.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1231.1 910 72.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 844 75.7
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1226.5 897 72.6
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1226.1 860 74.0
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 854 74.2
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1224.2 853 76.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 850 74.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 824 76.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1218.4 854 74.1
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1218.0 824 76.3
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1214.1 849 75.0
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 836 75.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1207.2 845 75.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1204.9 829 75.0
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1203.0 868 72.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 856 74.1
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1201.0 834 74.3
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1199.1 869 73.4
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1198.7 843 74.7
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1198.3 854 73.3
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1194.9 849 73.9
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1191.0 857 73.3
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1190.6 820 75.1
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 843 74.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1186.0 828 74.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1186.0 779 78.2
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1185.2 810 75.9
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1183.3 831 73.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1181.0 831 73.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1177.2 833 73.5
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1176.8 847 73.2
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1176.0 844 73.2
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1167.9 822 74.8
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1167.1 834 74.3
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1165.6 815 74.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1163.3 717 83.5
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 838 73.4
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1162.1 832 73.9
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1162.1 832 73.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1161.7 820 73.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1161.0 831 73.9
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 851 72.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 851 72.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 851 72.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 851 72.5
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1159.4 860 70.6
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1156.0 835 73.9
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1153.7 897 68.6
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 839 72.0
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1147.5 895 69.9
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1147.1 832 72.6
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1146.0 820 73.3
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1142.1 821 71.9
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1142.1 824 72.6
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1141.7 820 73.0
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1140.9 824 71.6
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 832 72.4
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1139.4 834 73.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1137.9 838 71.6
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1137.5 834 73.3
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1135.6 820 72.0
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1135.6 834 73.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1132.1 815 73.3
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1131.7 810 73.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1127.5 829 72.3
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1126.7 862 69.7
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1124.8 828 71.6
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1123.6 875 69.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 829 70.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1119.4 781 76.1
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1111.7 841 69.8
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1111.3 825 70.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1109.0 822 71.8
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1104.7 835 70.8
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1102.4 804 71.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1095.5 817 70.3
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1092.8 844 64.8
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1088.6 881 67.7
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1082.8 828 70.0
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 2.7e-311 1071.6 841 69.3
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 3.8e-311 1071.2 819 70.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 3.8e-311 1071.2 817 69.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 3.6e-306 1054.7 757 72.9
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 1.8e-305 1052.4 810 67.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 4.6e-301 1037.7 819 66.4
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 2.3e-300 1035.4 888 63.9
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.4e-299 1030.4 818 65.9
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.1e-297 1025.0 812 67.0
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 9.7e-283 976.9 809 66.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 1.6e-282 976.1 735 71.7
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.3e-282 974.2 772 67.5
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.0e-243 846.3 580 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.9e-239 832.4 631 65.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 4.4e-227 792.0 552 76.3
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 2.3e-223 779.6 599 67.1
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.9e-217 760.0 518 73.9
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.4e-195 686.0 651 58.8
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.1e-142 511.5 329 76.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.4e-142 509.6 359 77.2
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.7e-123 445.7 403 57.8
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.7e-114 417.9 317 72.9
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.4e-110 403.3 340 62.9
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.7e-99 367.5 278 66.5
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-98 365.2 525 50.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.3e-74 284.6 153 88.9
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.5e-59 234.2 156 75.6
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 9.1e-31 139.8 74 87.8
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.0e-29 136.3 76 82.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.9e-28 132.1 481 28.5
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.9e-28 132.1 437 28.1
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-27 129.4 113 57.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 8.0e-27 126.7 63 92.1
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.0e-25 122.1 96 66.7
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.5e-25 120.2 451 25.3
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 5.5e-20 104.0 106 53.8
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.2e-20 103.6 442 26.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 3.6e-19 101.3 200 34.5
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 5.4e-15 87.4 220 32.3
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-14 83.6 209 29.2
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 5.0e-13 80.9 78 55.1
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.0e-10 73.2 155 34.2
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.3e-08 66.2 138 30.4
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 62.8 88 40.9
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 7.0e-07 60.5 48 64.6


User provided reference genes

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