Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 2173.3 1121 100.0
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1802.7 1199 80.7
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1786.2 1189 80.4
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1609.3 1195 74.0
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1527.7 1205 70.4
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1526.1 1048 78.8
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1520.0 1187 70.3
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1463.4 1188 68.0
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1456.8 1203 66.7
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1456.8 1203 66.7
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1399.4 1128 69.1
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1342.0 1194 63.0
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1319.3 1207 62.2
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1313.5 1204 61.7
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1312.0 1207 61.6
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1300.8 1200 61.4
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1289.2 1202 60.8
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1285.4 1197 59.9
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1284.2 1210 61.3
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1271.1 1191 59.4
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1270.0 1202 59.5
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1266.9 1201 59.3
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1266.1 1202 59.7
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1262.7 1217 59.4
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1261.9 1216 58.7
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1255.7 1187 60.8
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1253.4 1194 59.1
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1248.8 1193 59.3
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1245.7 1195 59.2
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1238.8 1199 59.0
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1235.3 1196 59.2
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1231.9 1192 58.9
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1231.9 1141 59.7
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1230.3 1190 59.2
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1225.7 1195 58.4
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1223.8 1201 59.0
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1219.1 1202 57.9
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1218.8 1185 57.6
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1218.0 1200 57.8
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1217.6 1184 57.7
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1213.4 888 72.3
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1209.9 1224 56.9
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1209.9 1192 58.1
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1209.1 1212 56.5
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1206.4 1207 57.1
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1202.6 1176 57.5
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1202.6 1158 58.5
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1200.3 1175 57.5
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1197.2 1176 57.1
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1195.3 1176 57.2
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1194.5 1205 57.5
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1191.0 1176 58.0
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1186.8 1216 55.5
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1186.0 1136 58.4
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1180.2 1216 56.5
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1176.4 1151 58.0
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1171.0 1198 55.2
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1170.2 1204 55.0
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1169.5 1198 55.2
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1168.7 1176 57.4
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1167.9 1191 55.8
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1160.6 1205 55.8
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1160.2 1202 54.7
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1149.8 1183 55.3
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1149.4 1190 54.8
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1143.6 1109 58.6
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1143.6 1065 59.8
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1142.1 1204 56.6
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1139.0 1186 55.1
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1134.8 1066 59.1
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1117.4 1215 54.2
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1109.0 1175 54.2
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1107.4 1052 58.8
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1099.0 1198 52.8
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1098.6 1064 58.8
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1094.3 1194 53.9
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1084.3 1198 53.0
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 7.7e-312 1073.9 925 62.2
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 3.8e-309 1065.1 934 62.0
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 8.7e-306 1053.9 1170 52.2
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 2.0e-302 1042.7 1175 50.0
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 6.0e-299 1031.2 1200 50.5
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 2.3e-298 1029.2 921 60.7
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 9.6e-297 1023.8 928 61.1
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 5.3e-295 1018.1 959 58.2
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 1.5e-294 1016.5 922 58.6
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.0e-294 1016.1 1183 51.0
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 5.8e-294 1014.6 1214 48.8
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 6.4e-293 1011.1 922 58.9
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 3.2e-292 1008.8 925 60.6
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 4.2e-292 1008.4 1041 55.0
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 1.5e-289 1000.0 1042 55.6
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 5.3e-287 991.5 931 56.5
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 3.4e-278 962.2 1114 50.4
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 9.3e-276 954.1 1067 52.4
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.0e-270 936.4 1080 51.7
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 9.7e-265 917.5 892 56.8
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.2e-264 916.4 1035 52.6
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 2.4e-207 726.9 944 48.4
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 7.6e-201 705.3 1225 39.4
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 3.3e-196 689.9 1062 40.3
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 1.5e-193 681.0 1204 41.9
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 6.6e-189 665.6 1091 40.7
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 2.1e-171 607.4 1152 36.5
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 9.7e-156 555.4 702 48.9
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.4e-149 535.0 737 44.4
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 7.4e-140 502.7 506 53.6
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.3e-138 496.5 515 54.4
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.7e-136 491.5 467 57.2
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-88 332.4 329 55.0
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-88 332.4 329 55.0
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 2.3e-88 331.6 324 55.9
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 3.3e-87 327.8 1331 26.5
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 1.3e-83 315.8 311 52.4
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 4.2e-66 257.7 228 60.5
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 4.2e-66 257.7 228 60.5
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 3.7e-62 244.6 251 55.0
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 3.2e-58 231.5 186 68.3
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 4.3e-55 221.1 169 65.1
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 2.1e-54 218.8 173 64.7
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 4.8e-46 191.0 241 50.2
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-45 189.1 238 50.0
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 5.9e-44 184.1 150 62.7
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 8.5e-43 180.3 317 42.9
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 3.7e-38 164.9 89 85.4
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 1.4e-37 162.9 145 60.0
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 6.9e-37 160.6 89 83.1
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 6.3e-30 137.5 67 95.5
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 7.0e-29 134.0 79 78.5
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.6e-23 115.5 246 37.8
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 2.2e-22 112.5 174 41.4
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 2.4e-21 109.0 101 64.4
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.6e-20 106.3 237 38.4
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-18 98.6 93 58.1
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 7.2e-18 97.4 70 71.4
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 3.6e-17 95.1 109 43.1
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 1.8e-16 92.8 439 25.3
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 5.7e-15 87.8 205 39.0
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 2.2e-14 85.9 46 78.3
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 3.5e-12 78.6 44 84.1
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.5e-10 73.2 65 64.6
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 8.0e-09 67.4 38 76.3


User provided reference genes

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