Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 3.0e-162 575.1 283 100.0
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 6.5e-141 504.2 288 88.2
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 5.3e-135 484.6 301 82.1
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.3e-121 438.7 280 78.2
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 9.7e-121 437.2 282 78.4
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.8e-120 435.6 289 78.2
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 5.9e-118 427.9 279 76.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 8.2e-112 407.5 318 67.6
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.4e-111 406.8 318 67.3
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.5e-108 396.7 300 68.7
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 3.2e-108 395.6 304 68.1
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 9.4e-108 394.0 301 68.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.2e-107 393.7 303 68.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.2e-105 387.1 293 67.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 4.4e-105 385.2 298 65.8
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 2.8e-104 382.5 295 67.5
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 3.8e-101 372.1 305 65.2
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.1e-100 370.5 300 64.0
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 4.7e-99 365.2 234 77.4
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.0e-98 362.5 297 60.9
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.2e-98 361.7 299 60.9
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.2e-98 361.7 299 60.9
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 4.4e-97 358.6 297 62.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 3.7e-96 355.5 297 62.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 8.3e-96 354.4 296 61.1
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.8e-95 353.2 300 60.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.8e-95 353.2 301 61.1
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 4.1e-95 352.1 296 61.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 5.4e-95 351.7 298 61.4
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 5.4e-95 351.7 297 60.9
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 9.1e-95 350.9 307 60.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.6e-94 350.1 298 62.4
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-93 347.1 291 60.1
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 6.5e-93 344.7 301 60.5
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 8.6e-93 344.4 285 62.8
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.1e-92 344.0 303 60.1
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.1e-92 344.0 298 58.4
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.5e-92 342.8 305 57.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 2.5e-92 342.8 279 63.1
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 7.2e-92 341.3 301 58.1
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.1e-91 339.7 291 58.4
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.8e-91 339.3 285 60.4
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.7e-91 338.6 288 61.8
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 4.7e-91 338.6 288 62.2
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.1e-91 338.2 288 61.8
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 3.0e-90 335.9 299 58.2
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 4.4e-89 332.0 291 60.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 4.4e-89 332.0 299 58.9
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.8e-88 329.3 231 71.0
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 8.3e-88 327.8 302 57.6
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.4e-87 327.0 305 58.4
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.0e-85 320.9 299 58.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.7e-85 320.1 297 58.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.8e-85 318.9 280 60.7
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 6.6e-85 318.2 294 58.5
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.1e-84 317.4 283 57.2
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.5e-84 316.2 296 57.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 7.3e-84 314.7 291 57.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.2e-83 313.9 278 61.9
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.1e-83 313.2 294 58.5
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.1e-83 313.2 294 58.5
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.6e-83 312.4 297 58.2
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 4.7e-83 312.0 303 54.1
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 8.0e-83 311.2 303 53.8
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.4e-82 310.5 280 60.7
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.8e-82 310.1 291 56.0
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.8e-82 310.1 291 57.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.3e-82 309.7 280 60.7
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.0e-82 309.3 293 59.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.2e-82 308.5 297 58.2
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.6e-81 306.2 294 54.8
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.5e-81 304.7 300 55.0
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.7e-80 303.5 297 54.5
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-79 300.8 304 54.6
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.8e-79 300.1 197 71.1
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.4e-79 299.7 263 59.3
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 5.4e-79 298.5 294 53.1
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 5.4e-79 298.5 294 53.1
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 9.2e-79 297.7 301 52.2
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.2e-78 297.4 283 56.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.0e-77 294.3 287 56.8
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.3e-77 293.9 294 53.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.3e-77 293.1 200 71.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.1e-76 290.8 310 53.2
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.5e-76 290.4 167 81.4
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.9e-76 290.0 300 52.0
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.9e-76 290.0 297 52.9
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 5.2e-74 282.0 298 51.3
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.2e-73 280.8 297 52.2
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.6e-73 279.6 310 50.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 9.8e-73 277.7 303 48.2
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 8.3e-72 274.6 303 49.8
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.1e-71 274.2 299 51.8
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 2.4e-71 273.1 290 52.4
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.6e-70 270.4 287 53.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.8e-70 268.1 294 51.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.0e-69 267.7 303 49.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.3e-69 267.3 300 50.3
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 5.0e-69 265.4 295 50.2
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.1e-68 264.2 244 54.9
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 7.3e-68 261.5 303 47.9
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 9.5e-68 261.2 316 46.5
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.6e-67 260.4 290 49.7
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.8e-67 259.6 303 48.2
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.7e-67 258.8 292 52.1
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.4e-66 257.3 290 46.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.3e-66 256.5 289 49.1
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.2e-65 254.2 299 47.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.5e-65 253.8 278 52.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 4.4e-65 252.3 290 48.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.9e-65 251.1 214 57.5
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.7e-64 250.4 299 46.5
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.2e-64 250.0 297 47.8
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.2e-63 246.1 290 48.3
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 7.8e-62 241.5 284 48.2
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 7.8e-62 241.5 275 49.8
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.3e-61 240.7 299 45.8
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 2.3e-61 240.0 205 59.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-60 237.7 173 69.4
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-60 237.7 173 69.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.5e-60 236.5 299 45.8
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 5.6e-60 235.3 299 45.2
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.6e-59 232.6 292 45.2
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 8.1e-59 231.5 287 47.0
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.4e-58 230.7 292 44.9
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.4e-58 230.7 258 50.8
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 5.8e-57 225.3 281 44.5
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.2e-56 223.4 265 48.3
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 6.4e-56 221.9 276 44.9
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 5.4e-55 218.8 109 88.1
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.6e-54 215.7 267 46.1
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 7.8e-54 214.9 253 45.1
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.3e-53 213.4 267 45.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.6e-49 199.9 302 41.1
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-44 184.5 314 36.9
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.1e-43 180.3 316 36.1
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 2.8e-43 179.9 321 35.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.8e-43 179.9 318 36.2
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.4e-42 176.8 169 53.3
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.5e-41 174.1 168 53.6
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.9e-40 169.9 308 36.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.1e-39 167.9 169 51.5
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 2.7e-38 163.3 316 33.9
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 5.1e-37 159.1 163 48.5
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.9e-34 148.7 149 51.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.0e-33 147.1 284 35.2
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.8e-29 134.0 339 31.3
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.8e-27 126.7 272 31.6
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.0e-21 108.2 216 35.2
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 4.2e-15 86.3 128 46.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.2e-14 84.7 116 44.8
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.2e-14 84.7 116 44.8
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.4e-13 81.3 131 40.5


User provided reference genes

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