Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.7e-85 319.3 164 100.0
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.2e-69 265.8 164 86.0
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 8.8e-66 253.8 164 79.9
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 5.7e-65 251.1 154 82.5
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 5.7e-65 251.1 154 82.5
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.7e-64 249.6 175 75.4
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 2.8e-64 248.8 166 79.5
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 3.7e-64 248.4 177 76.8
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 6.3e-64 247.7 172 76.7
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 9.1e-63 243.8 169 75.1
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.6e-62 243.0 173 74.0
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 3.2e-60 235.3 165 73.3
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-59 233.4 164 72.6
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.2e-59 233.4 164 75.6
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 4.0e-58 228.4 172 69.2
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 6.8e-58 227.6 169 71.6
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.5e-57 226.5 171 69.6
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 2.6e-57 225.7 173 66.5
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 9.8e-57 223.8 155 72.3
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.8e-57 223.8 155 72.3
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-56 223.4 175 65.7
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 2.2e-56 222.6 159 71.1
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.8e-56 222.2 155 72.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.8e-56 221.5 174 66.1
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-55 220.3 174 67.2
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.4e-55 219.2 167 66.5
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.6e-54 216.5 174 65.5
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.0e-54 216.1 165 67.9
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 7.7e-54 214.2 150 73.3
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 7.7e-54 214.2 155 69.7
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.0e-53 213.8 169 67.5
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.0e-53 213.8 157 66.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.0e-53 213.8 171 66.1
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-53 213.4 175 65.7
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.3e-53 212.6 173 65.3
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.3e-53 212.6 162 67.3
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.5e-52 209.9 155 71.6
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 3.3e-52 208.8 163 67.5
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 7.2e-52 207.6 171 66.1
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.8e-51 205.7 234 52.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.1e-51 204.5 146 71.2
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 8.0e-51 204.1 163 66.3
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.3e-50 202.6 146 69.9
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 4.0e-50 201.8 164 66.5
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.2e-50 201.4 156 67.9
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 5.2e-50 201.4 173 61.3
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 8.9e-50 200.7 170 64.1
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 8.9e-50 200.7 152 63.8
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.0e-49 199.5 169 60.4
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.6e-49 199.1 153 66.7
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.6e-49 199.1 174 58.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.4e-49 198.7 152 63.2
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.7e-49 198.0 163 63.2
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 9.8e-49 197.2 169 60.9
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.3e-48 196.8 167 62.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.3e-48 196.8 159 65.4
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 4.9e-48 194.9 149 66.4
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 4.9e-48 194.9 152 61.2
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 6.3e-48 194.5 152 60.5
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.4e-47 193.4 152 67.1
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.8e-47 193.0 158 63.9
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.4e-47 192.6 271 45.4
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 7.0e-47 191.0 165 59.4
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.2e-46 190.3 165 61.8
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.2e-46 190.3 152 60.5
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.0e-46 189.5 161 57.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.5e-46 188.7 161 57.8
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.5e-46 188.3 179 59.2
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 5.9e-46 188.0 162 57.4
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 5.9e-46 188.0 173 57.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 7.8e-46 187.6 175 54.9
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 7.8e-46 187.6 164 56.1
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 7.8e-46 187.6 170 60.0
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 7.8e-46 187.6 163 57.1
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 7.8e-46 187.6 169 59.2
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.3e-45 186.8 163 57.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.3e-45 186.8 166 60.8
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.9e-45 185.7 164 56.1
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.9e-45 185.7 164 56.1
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 3.8e-45 185.3 200 52.5
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 6.6e-45 184.5 166 56.6
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 6.6e-45 184.5 160 61.2
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 6.6e-45 184.5 165 58.8
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 8.6e-45 184.1 157 57.3
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-44 183.7 171 56.7
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.1e-44 183.7 171 56.7
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 1.5e-44 183.3 161 56.5
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 2.5e-44 182.6 142 68.3
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 3.3e-44 182.2 181 56.4
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 4.3e-44 181.8 164 60.4
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 5.6e-44 181.4 165 57.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.2e-43 180.3 165 57.0
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.6e-43 179.9 170 57.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.1e-43 179.5 163 58.9
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.8e-43 179.1 155 63.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 3.6e-43 178.7 172 56.4
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.0e-42 177.2 121 71.9
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.8e-42 176.4 150 59.3
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 6.8e-42 174.5 170 57.1
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-41 173.7 158 58.2
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 7.5e-41 171.0 149 59.7
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.3e-40 170.2 149 59.7
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 2.2e-40 169.5 155 58.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.1e-39 167.2 173 52.6
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.4e-39 166.8 154 61.0
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 7.8e-38 161.0 168 55.4
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 5.0e-37 158.3 227 44.5
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.5e-36 156.0 135 58.5
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.3e-36 155.2 140 55.7
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 2.1e-35 152.9 119 60.5
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 2.1e-35 152.9 140 55.7
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 3.6e-35 152.1 170 51.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 4.7e-35 151.8 121 62.0
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-32 141.4 117 57.3
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-32 141.4 120 55.8
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.4e-31 139.4 163 50.3
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.4e-31 139.4 119 54.6
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 4.1e-31 138.7 154 49.4
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.1e-30 136.3 149 48.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.1e-30 136.3 149 48.3
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.0e-29 134.0 117 60.7
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.0e-29 132.5 250 36.8
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 3.9e-29 132.1 167 43.1
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 6.6e-29 131.3 156 44.9
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 6.8e-26 121.3 154 45.5
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.7e-24 116.7 99 55.6
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 4.9e-24 115.2 128 48.4
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 4.9e-24 115.2 128 48.4
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.2e-23 112.5 121 55.4
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.7e-22 109.4 135 43.7
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 4.6e-22 108.6 177 40.7
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-20 103.2 103 48.5
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 8.1e-19 97.8 82 63.4
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 5.8e-17 91.7 170 38.2
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.4e-15 86.3 115 42.6
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.7e-14 82.8 88 48.9
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-13 80.5 88 47.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.3e-13 79.7 88 48.9
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-13 79.7 88 48.9
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 3.3e-12 75.9 88 45.5
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-11 72.8 84 45.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.8e-11 72.8 84 45.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 7.6e-09 64.7 48 60.4
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.9e-08 62.0 57 56.1
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.4e-08 61.6 58 60.3
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 7.8e-06 54.7 61 49.2


User provided reference genes

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