Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 1.8e-57 225.7 117 100.0
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 9.2e-33 143.7 132 61.4
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 3.8e-31 138.3 125 60.8
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 8.6e-31 137.1 125 58.4
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 1.5e-30 136.3 126 58.7
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 6.1e-29 131.0 129 58.9
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 6.1e-29 131.0 125 59.2
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 3.4e-27 125.2 129 57.4
TPR.G13172 Trifolium pratense HOM05D002412 ORTHO05D002516 1.7e-26 122.9 130 59.2
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 1.2e-24 116.7 125 57.6
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 2.3e-20 102.4 117 52.1
Lalb_Chr22g0355701 Lupinus albus HOM05D002412 ORTHO05D002516 5.8e-19 97.8 129 50.4
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 2.9e-18 95.5 127 50.4
arahy.Tifrunner.gnm1.ann1.QB6IYV Arachis hypogaea HOM05D002412 ORTHO05D002516 3.0e-15 85.5 135 48.1
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 1.5e-14 83.2 126 43.7
Glyma.06G047300 Glycine max HOM05D002412 ORTHO05D002516 1.2e-13 80.1 125 43.2
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-13 79.7 126 43.7
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 1.6e-13 79.7 113 47.8
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.6e-13 78.6 126 42.9
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.6e-13 78.6 113 46.0
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.7e-13 78.2 116 45.7
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 6.2e-13 77.8 118 46.6
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 1.1e-12 77.0 134 40.3
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.1e-12 77.0 123 41.5
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.4e-12 76.6 126 47.6
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 3.1e-12 75.5 124 42.7
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 6.8e-12 74.3 104 46.2
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 6.8e-12 74.3 133 39.1
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 1.2e-11 73.6 106 47.2
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.6e-11 72.4 133 39.1
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.6e-11 72.4 125 41.6
Phvul.009G072700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 2.6e-11 72.4 123 41.5
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 3.4e-11 72.0 125 46.4
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 3.4e-11 72.0 122 41.0
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 5.8e-11 71.2 143 45.5
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 5.8e-11 71.2 130 42.3
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 5.8e-11 71.2 130 39.2
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 7.5e-11 70.9 136 41.2
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 9.9e-11 70.5 127 44.1
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 9.9e-11 70.5 112 42.9
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 9.9e-11 70.5 132 38.6
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 2.9e-10 68.9 130 40.8
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 3.7e-10 68.6 127 38.6
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 3.7e-10 68.6 127 40.2
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 4.9e-10 68.2 131 36.6
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 8.3e-10 67.4 114 43.0
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 1.4e-09 66.6 126 42.9
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.9e-09 66.2 126 40.5
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 1.9e-09 66.2 138 37.7
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 2.4e-09 65.9 117 42.7
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 3.2e-09 65.5 140 37.1
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 3.2e-09 65.5 126 37.3
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 3.2e-09 65.5 129 37.2
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 4.1e-09 65.1 132 36.4
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 4.1e-09 65.1 132 42.4
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 4.1e-09 65.1 116 39.7
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 5.4e-09 64.7 121 43.0
CARHR283950 Cardamine hirsuta HOM05D014607 ORTHO05D016575 7.1e-09 64.3 117 40.2
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 7.1e-09 64.3 126 37.3
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 7.1e-09 64.3 121 38.8
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 7.1e-09 64.3 123 43.1
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 7.1e-09 64.3 123 36.6
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 9.2e-09 63.9 135 37.8
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 9.2e-09 63.9 89 47.2
Lj1g0008942 Lotus japonicus HOM05D002412 ORTHO05D002516 9.2e-09 63.9 122 38.5
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.2e-08 63.5 128 39.1
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 1.2e-08 63.5 75 45.3
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.2e-08 63.5 117 40.2
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 1.2e-08 63.5 125 40.0
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-08 63.2 126 37.3
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-08 63.2 126 37.3
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.6e-08 63.2 126 37.3
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 1.6e-08 63.2 123 39.0
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 2.1e-08 62.8 125 37.6
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.1e-08 62.8 129 45.0
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 2.1e-08 62.8 121 38.8
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 2.1e-08 62.8 128 38.3
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.7e-08 62.4 130 38.5
Thhalv10023721m.g Eutrema salsugineum HOM05D014607 ORTHO05D016575 2.7e-08 62.4 116 41.4
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 2.7e-08 62.4 127 37.8
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 2.7e-08 62.4 133 36.1
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 3.5e-08 62.0 133 36.8
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.5e-08 62.0 128 38.3
arahy.Tifrunner.gnm1.ann1.3RQF03 Arachis hypogaea HOM05D002412 ORTHO05D002516 4.6e-08 61.6 134 41.8
Carub.0002s0605 Capsella rubella HOM05D014607 ORTHO05D016575 4.6e-08 61.6 113 43.4
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 4.6e-08 61.6 125 40.0
Sp2g05130 Schrenkiella parvula HOM05D014607 ORTHO05D016575 4.6e-08 61.6 115 40.0
AL2G17750 Arabidopsis lyrata HOM05D014607 ORTHO05D016575 6.0e-08 61.2 117 41.9
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 6.0e-08 61.2 128 39.1
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 6.0e-08 61.2 133 32.3
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 6.0e-08 61.2 135 37.8
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 6.0e-08 61.2 132 36.4
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 6.0e-08 61.2 132 35.6
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 7.8e-08 60.8 130 38.5
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 7.8e-08 60.8 127 36.2
Sed0010950 Sechium edule HOM05D002412 ORTHO05D002516 7.8e-08 60.8 107 44.9
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 7.8e-08 60.8 137 33.6
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.0e-07 60.5 114 37.7
VMungo0795G0001 Vigna mungo HOM05D002412 ORTHO05D002516 1.0e-07 60.5 146 34.9
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 1.3e-07 60.1 112 38.4
RcHm_v2.0_Chr6g0309821 Rosa chinensis HOM05D002412 ORTHO05D002516 1.3e-07 60.1 83 48.2
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.3e-07 60.1 133 34.6
Cpa.g.sc142.41 Carica papaya HOM05D002412 ORTHO05D002516 1.7e-07 59.7 132 40.2
ClCG08G016590 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.7e-07 59.7 108 40.7
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 1.7e-07 59.7 128 36.7
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 3.0e-07 58.9 130 37.7
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 3.0e-07 58.9 126 39.7
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 3.0e-07 58.9 137 36.5
THA.LOC104824967 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 3.0e-07 58.9 72 51.4
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 3.0e-07 58.9 123 37.4
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.9e-07 58.5 140 37.9
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.9e-07 58.5 121 38.0
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 5.1e-07 58.2 130 36.2
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 5.1e-07 58.2 135 34.8
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 5.1e-07 58.2 144 34.7
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 5.1e-07 58.2 121 38.8
THA.LOC104819947 Tarenaya hassleriana HOM05D014607 ORTHO05D016575 5.1e-07 58.2 111 42.3
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 8.6e-07 57.4 127 39.4
EL10Ac9g22186 Beta vulgaris HOM05D002412 ORTHO05D002516 8.6e-07 57.4 135 36.3
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 8.6e-07 57.4 122 38.5
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 8.6e-07 57.4 125 37.6
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 8.6e-07 57.4 113 40.7
AT1G58460 Arabidopsis thaliana HOM05D014607 ORTHO05D016575 1.1e-06 57.0 129 38.8
CsaV3_2G026020 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.1e-06 57.0 115 40.0
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 1.1e-06 57.0 123 38.2
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.1e-06 57.0 112 39.3
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.1e-06 57.0 125 38.4
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.5e-06 56.6 112 40.2
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 1.5e-06 56.6 113 39.8
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 1.5e-06 56.6 118 42.4
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 1.5e-06 56.6 128 33.6
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.9e-06 56.2 113 41.6
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 2.5e-06 55.8 126 38.1
MELO3C010796.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.5e-06 55.8 112 41.1
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 2.5e-06 55.8 141 36.2
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 3.3e-06 55.5 124 37.9
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 3.3e-06 55.5 105 40.0
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 4.3e-06 55.1 122 40.2
Gorai.010G026300 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.3e-06 55.1 129 37.2
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 4.3e-06 55.1 111 36.9
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.3e-06 55.1 154 34.4
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 5.6e-06 54.7 123 35.0
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 5.6e-06 54.7 135 37.8
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 5.6e-06 54.7 147 33.3
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 7.3e-06 54.3 114 37.7
unitig_744.g24125 Utricularia gibba HOM05D002412 ORTHO05D002516 7.3e-06 54.3 118 39.0
MSTRG.1024 Avicennia marina HOM05D002412 ORTHO05D002516 9.5e-06 53.9 121 38.8
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 9.5e-06 53.9 117 40.2
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 9.5e-06 53.9 135 37.8


User provided reference genes

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