Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 9.8e-97 356.7 167 100.0
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 9.9e-89 330.1 167 89.2
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.9e-87 325.9 167 89.2
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.3e-85 319.7 167 86.8
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 3.0e-85 318.5 167 86.8
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 5.1e-85 317.8 167 86.2
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.5e-84 316.2 167 85.0
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.5e-84 316.2 167 85.6
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.2e-83 313.2 167 85.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 2.8e-83 312.0 167 84.4
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 3.4e-81 305.1 167 81.4
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.9e-79 299.3 167 78.4
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 7.1e-79 297.4 167 78.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.2e-78 296.6 166 76.5
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.1e-78 295.8 167 79.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 2.7e-78 295.4 167 77.8
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 3.5e-78 295.0 167 77.2
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 4.6e-78 294.7 167 79.0
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 4.6e-78 294.7 167 79.0
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.7e-77 292.7 167 78.4
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 2.3e-77 292.4 167 79.6
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.0e-77 292.0 167 76.0
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 2.5e-76 288.9 167 78.4
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 77.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 76.6
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 7.3e-76 287.3 167 76.6
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 9.6e-76 287.0 167 77.2
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.2e-75 286.6 167 74.9
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.2e-75 286.6 167 75.4
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 77.2
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 77.2
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 77.2
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.8e-75 285.4 166 77.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.4e-74 283.1 167 74.9
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 3.1e-74 282.0 164 72.6
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.2e-74 281.2 167 74.9
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 6.9e-74 280.8 167 74.9
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 6.9e-74 280.8 167 74.9
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 6.9e-74 280.8 167 73.7
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.5e-73 279.6 167 74.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 73.7
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.6e-73 278.9 164 72.6
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 73.1
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 4.4e-73 278.1 174 72.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 5.8e-73 277.7 166 72.3
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.9e-72 275.4 167 71.9
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 6.4e-72 274.2 167 71.9
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 4.2e-71 271.6 167 71.3
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 5.4e-71 271.2 167 74.3
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 9.3e-71 270.4 167 73.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.1e-70 269.2 167 71.9
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.7e-70 268.9 168 70.8
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 70.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 71.3
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 6.0e-70 267.7 167 68.3
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.3e-69 266.5 167 71.3
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 71.4
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 70.8
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 71.4
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 70.8
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 70.8
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.3e-69 265.8 165 71.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 5.1e-69 264.6 168 70.2
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 8.7e-69 263.8 166 71.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 70.8
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.5e-68 263.1 167 71.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 70.2
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 70.2
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 69.6
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 69.6
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.3e-67 260.0 168 69.0
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 70.1
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.8e-67 258.8 165 70.3
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 4.8e-67 258.1 178 67.4
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.1e-67 257.3 167 67.1
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-66 256.9 166 68.1
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 67.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 70.1
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 70.1
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.4e-66 256.5 189 64.6
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 64.7
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 69.6
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-66 255.8 203 59.6
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.1e-66 255.4 166 67.5
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 68.9
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 4.0e-66 255.0 166 67.5
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 5.3e-66 254.6 167 64.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 6.9e-66 254.2 167 66.5
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 66.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 5.8e-65 251.1 164 66.5
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.2e-64 249.2 159 66.0
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.1e-63 246.9 219 54.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.4e-63 246.5 179 63.1
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 3.2e-63 245.4 189 59.8
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 3.5e-62 241.9 168 67.9
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 6.0e-62 241.1 167 61.1
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 8.7e-61 237.3 134 76.9
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.1e-60 236.9 167 64.1
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 4.3e-60 235.0 165 63.6
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 9.6e-60 233.8 167 60.5
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 8.1e-59 230.7 166 62.0
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 5.3e-58 228.0 189 55.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 6.9e-58 227.6 167 58.1
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.6e-57 225.7 165 60.0
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 3.5e-54 215.3 166 57.8
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-53 212.6 175 54.9
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.0e-53 212.2 126 70.6
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 4.3e-52 208.4 127 70.1
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 2.1e-51 206.1 134 67.9
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 3.7e-51 205.3 166 57.2
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 4.8e-51 204.9 149 62.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 9.0e-50 200.7 167 52.7
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.0e-48 197.2 176 49.4
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.4e-48 194.1 167 57.5
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.3e-45 186.8 177 52.0
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 3.0e-45 185.7 164 53.7
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 5.1e-45 184.9 167 50.9
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.9e-44 183.0 116 68.1
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 5.7e-44 181.4 166 47.6
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.6e-43 179.9 122 63.9
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 2.2e-43 179.5 165 49.1
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 9.0e-42 174.1 97 77.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 9.0e-42 174.1 97 77.3
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.0e-42 174.1 167 48.5
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-41 173.3 133 54.9
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.5e-41 173.3 131 64.1
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 5.9e-41 171.4 166 49.4
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 5.9e-41 171.4 167 50.3
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.3e-39 164.1 164 47.0
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.4e-37 160.2 164 48.2
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.7e-37 157.9 139 52.5
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-36 157.1 150 51.3
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.3e-36 155.6 117 60.7
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 6.3e-35 151.4 98 65.3
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 4.2e-31 138.7 97 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.2e-30 137.1 127 45.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.3e-29 132.9 183 42.6
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.6e-28 129.4 152 46.7
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.3e-26 121.7 80 65.0
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.5e-25 118.6 166 39.8
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 5.9e-25 118.2 112 50.0
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 7.7e-25 117.9 126 41.3
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.8e-24 115.5 165 38.8
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.6e-20 102.8 89 50.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 2.6e-20 102.8 86 55.8
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.1e-15 87.4 167 30.5
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-13 79.3 65 49.2
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-12 77.4 64 48.4
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-12 77.4 64 48.4
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-12 76.6 59 49.2
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 9.7e-12 74.3 41 78.0
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-11 72.4 59 47.5
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-11 72.4 64 46.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.2e-11 71.2 64 45.3
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.4e-10 69.7 117 30.8
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 3.1e-10 69.3 61 49.2
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 5.3e-10 68.6 136 32.4
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 7.0e-10 68.2 167 27.5
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.7e-09 66.2 47 68.1
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 2.7e-09 66.2 127 31.5
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 3.8e-08 62.4 39 74.4
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 3.8e-08 62.4 136 27.9
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.0e-08 62.0 44 59.1
Atru.chr2.3707 Acer truncatum HOM05D004267 ORTHO05D000004 5.5e-07 58.5 34 67.6
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 3.6e-06 55.8 36 61.1


User provided reference genes

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